Factsheet for Solyc02g030210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g08580.t01	Wine grape	nucleus	72.08	59.39
KRG95240	Soybean	nucleus	67.24	56.46
KRH66909	Soybean	nucleus	67.81	56.26
Bra004641.1-P	Field mustard	nucleus	60.97	51.69
CDY23833	Canola	nucleus	59.83	49.41
CDY35402	Canola	nucleus	57.83	49.39
CDY22537	Canola	nucleus	59.26	48.6
GSMUA_AchrUn_...	Banana	nucleus	47.58	48.55
CDX79921	Canola	nucleus	59.26	48.26
KRH72011	Soybean	nucleus	60.4	47.43
AT2G41710.4	Thale cress	nucleus	60.68	46.41
Bra000237.1-P	Field mustard	nucleus	60.4	45.79
EES19464	Sorghum	nucleus	49.0	41.35
Os05t0389000-02	Rice	nucleus	48.43	40.0
TraesCS1A01G242800.1	Wheat	nucleus	47.29	39.71
TraesCS1D01G242800.1	Wheat	nucleus	47.58	39.57
TraesCS1B01G254300.1	Wheat	nucleus	47.58	39.57
HORVU1Hr1G056500.15	Barley	nucleus, plastid	47.86	37.33
Zm00001d038087_P003	Maize	mitochondrion	33.9	24.64
PGSC0003DMT400074397	Potato	nucleus	11.68	21.35
PGSC0003DMT400036707	Potato	nucleus	12.82	19.57
Solyc04g049800.2.1	Tomato	nucleus	21.37	18.84
Solyc03g044300.2.1	Tomato	nucleus	21.08	18.45
Solyc09g007260.2.1	Tomato	nucleus	23.08	17.8
Solyc10g084340.1.1	Tomato	nucleus	23.36	17.75
Solyc02g093150.2.1	Tomato	nucleus	21.37	16.82
Solyc06g075510.2.1	Tomato	nucleus	21.08	15.61
Solyc02g064960.2.1	Tomato	nucleus	22.22	15.48
Solyc11g072600.1.1	Tomato	nucleus	20.23	14.76
Solyc03g123430.2.1	Tomato	nucleus	19.37	13.26
Solyc02g030200.1.1	Tomato	nucleus	1.71	10.53

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ncoils:Coil
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:K4B572	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF32	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc02g030210.2	EnsemblPlants:Solyc02g030210.2.1	UniParc:UPI0002768BD5
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:25315546..25319092

Molecular Weight (calculated)

39639.1 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.770

Length

351 amino acids

Sequence
(BLAST)

001: MGIVHRWTGR YEAHLWDKST WNQNQNKKGK QVYLGAYDDE EAAARAYDLA ALKYWGPGTL INFPVTDYTR DLEEMQNVSR EDYLASLRRK SGGFSRGISK
101: YRPLSSRWDL QFGRVPGADY FNSLHYGDNA TVDNEYIGGF CMDRKIDLSS YIKWWGGNKA RQTDSHLKIS EETKVGCPED IDNELRASEL SIQQTEPYEM
201: PRLGVYQENK NHKSSTLSAV SILSQSAAYK SLVEKVAKKK EKVENDENEN KSTINRVDRG KMIEKSSPDS GSERLGAAFL NAGGLSINRN LHPLTPLLSG
301: PLLTNYNSID PLTDPVLWTS IVPNFHTGSS RTAEVHKSEA SSDYTLFQQE D

Best Arabidopsis Sequence Match ( AT2G41710.1 )
(BLAST)

001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.