Factsheet for GSMUA_AchrUn_randomP13500_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19464	Sorghum	nucleus	59.59	49.28
TraesCS1B01G254300.1	Wheat	nucleus	59.59	48.58
TraesCS1D01G242800.1	Wheat	nucleus	59.59	48.58
TraesCS1A01G242800.1	Wheat	nucleus	59.01	48.56
Solyc02g030210.2.1	Tomato	nucleus	48.55	47.58
Os05t0389000-02	Rice	nucleus	58.43	47.29
VIT_08s0007g08580.t01	Wine grape	nucleus	56.4	45.54
HORVU1Hr1G056500.15	Barley	nucleus, plastid	59.3	45.33
CDY35402	Canola	nucleus	53.49	44.77
Bra004641.1-P	Field mustard	nucleus	53.78	44.69
CDY22537	Canola	nucleus	55.52	44.63
KRH66909	Soybean	nucleus	53.78	43.74
KRG95240	Soybean	nucleus	52.03	42.82
CDY23833	Canola	nucleus	52.62	42.59
CDX79921	Canola	nucleus	53.2	42.46
Bra000237.1-P	Field mustard	nucleus	54.94	40.82
AT2G41710.4	Thale cress	nucleus	54.07	40.52
KRH72011	Soybean	nucleus	50.87	39.15
Zm00001d038087_P003	Maize	mitochondrion	44.19	31.47
GSMUA_Achr6P02730_001	Banana	nucleus	14.53	30.3
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	14.53	30.3
GSMUA_Achr7P16540_001	Banana	mitochondrion	20.35	25.45
GSMUA_Achr6P30870_001	Banana	nucleus	18.31	21.36
GSMUA_AchrUn_...	Banana	nucleus	20.64	20.23
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	20.93	19.89
GSMUA_Achr4P06100_001	Banana	nucleus	18.6	18.82
GSMUA_Achr8P01980_001	Banana	nucleus	19.77	18.38
GSMUA_Achr1P26080_001	Banana	nucleus	18.6	17.07
GSMUA_Achr9P03060_001	Banana	nucleus	21.22	16.86
GSMUA_Achr5P29290_001	Banana	nucleus	20.93	16.74
GSMUA_Achr10P...	Banana	nucleus	21.51	16.74
GSMUA_Achr9P22540_001	Banana	nucleus	17.44	16.53
GSMUA_Achr4P12860_001	Banana	nucleus	18.9	16.37
GSMUA_Achr6P33140_001	Banana	nucleus	22.67	16.35
GSMUA_Achr11P...	Banana	nucleus	20.35	16.2
GSMUA_AchrUn_...	Banana	nucleus	20.64	16.14
GSMUA_Achr5P07270_001	Banana	nucleus	22.38	15.81
GSMUA_Achr6P34420_001	Banana	nucleus	21.51	15.55
GSMUA_Achr3P28340_001	Banana	nucleus	19.77	15.45
GSMUA_Achr8P21030_001	Banana	nucleus	21.8	14.94
GSMUA_Achr9P04270_001	Banana	nucleus	20.06	14.65
GSMUA_Achr1P09830_001	Banana	nucleus	18.9	14.22
GSMUA_Achr3P13180_001	Banana	nucleus	20.64	13.98

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG13500_001
EnsemblPlants:GSMUA_AchrUn_randomP13500_001	EnsemblPlants:GSMUA_AchrUn_randomT13500_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0U8V9	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF32	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002966D0E	SEG:seg	:	:	:	:

Description

Putative AP2-like ethylene-responsive transcription factor At2g41710 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13500_001]

Coordinates

chrchrUn_random:+:64276718..64284537

Molecular Weight (calculated)

38483.3 Da

IEP (calculated)

8.517

GRAVY (calculated)

-0.688

Length

344 amino acids

Sequence
(BLAST)

001: MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA YDLAALKYWG AGTLINFPVT DYARDLEEMQ MVSKEDYLVK
101: SSAFSRGFPK YRGLSRQPQN NRWETPFRQM PGDEYFNNCS TSSDAATDGR FAGIAGLERK VDLTSYIKWW MPKKARQPES ASPVEDVGRE LRMLECSVQP
201: TEPYKLPSLG LPGRGDAPQR LSACSILSRS DSFKSFLHKS LNSGDIKDDG SHKTMDHEKS VPLLYSGCGL GISGVSVALN ELPVPRTAYQ MALLSAPLRS
301: SYPIDPASEP LLWTSPPPSQ QPLGEPQLRK NEMTSSAYAY QCQD

Best Arabidopsis Sequence Match ( AT2G41710.1 )
(BLAST)

001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.