Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22537 | Canola | nucleus | 94.65 | 90.89 |
| Bra000237.1-P | Field mustard | nucleus | 97.32 | 86.39 |
| CDX79921 | Canola | nucleus | 88.32 | 84.22 |
| CDY23833 | Canola | nucleus | 86.37 | 83.53 |
| AT2G41710.4 | Thale cress | nucleus | 85.64 | 76.69 |
| VIT_08s0007g08580.t01 | Wine grape | nucleus | 68.86 | 66.43 |
| KRG95240 | Soybean | nucleus | 63.02 | 61.96 |
| KRH66909 | Soybean | nucleus | 63.5 | 61.7 |
| Solyc02g030210.2.1 | Tomato | nucleus | 49.39 | 57.83 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.77 | 53.49 |
| KRH72011 | Soybean | nucleus | 57.66 | 53.02 |
| Os05t0389000-02 | Rice | nucleus | 48.42 | 46.82 |
| TraesCS1A01G242800.1 | Wheat | nucleus | 47.45 | 46.65 |
| EES19464 | Sorghum | nucleus | 47.2 | 46.63 |
| TraesCS1B01G254300.1 | Wheat | nucleus | 47.69 | 46.45 |
| TraesCS1D01G242800.1 | Wheat | nucleus | 47.69 | 46.45 |
| HORVU1Hr1G056500.15 | Barley | nucleus, plastid | 47.45 | 43.33 |
| Zm00001d038087_P003 | Maize | mitochondrion | 35.28 | 30.02 |
| CDY71682 | Canola | nucleus | 13.38 | 26.57 |
| CDY01432 | Canola | nucleus | 18.98 | 21.67 |
| CDY12814 | Canola | nucleus | 18.98 | 21.61 |
| CDX73419 | Canola | nucleus | 18.0 | 21.51 |
| PGSC0003DMT400074397 | Potato | nucleus | 9.98 | 21.35 |
| CDY68119 | Canola | nucleus | 17.76 | 21.28 |
| CDX69282 | Canola | nucleus | 20.19 | 20.75 |
| CDY07510 | Canola | nucleus | 16.55 | 20.73 |
| CDX83296 | Canola | nucleus | 21.41 | 20.18 |
| CDY04573 | Canola | nucleus | 22.14 | 20.04 |
| CDY15760 | Canola | nucleus | 21.9 | 19.82 |
| CDY62228 | Canola | nucleus | 20.68 | 19.72 |
| CDY29538 | Canola | nucleus | 20.68 | 19.68 |
| CDX95767 | Canola | nucleus | 19.95 | 19.66 |
| PGSC0003DMT400036707 | Potato | nucleus | 10.22 | 18.26 |
| CDY09223 | Canola | nucleus | 18.98 | 18.1 |
| CDY31576 | Canola | nucleus | 19.46 | 17.7 |
| CDX80199 | Canola | nucleus | 19.22 | 17.4 |
| CDY71179 | Canola | nucleus | 9.0 | 16.3 |
| CDY71282 | Canola | nucleus | 9.0 | 15.88 |
| CDY19560 | Canola | nucleus | 1.95 | 7.77 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | GO:A0A078HC80 | UniProt:A0A078HC80 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY35402 | ProteinID:CDY35402 | ProteinID:CDY35402.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00058389001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF32 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EEFDA4 | SEG:seg | : | : |
Description
BnaA03g19580DBnaA03g19580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HC80]
Coordinates
chrLK032351:+:164086..166691
Molecular Weight (calculated)
45151.7 Da
IEP (calculated)
9.330
GRAVY (calculated)
-0.778
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MASMSSPDQG PKTEAGGGGE SSENVSASDQ MLMYRSFKKA KKERGCTAKE RISKMPPCTA GKRSSIYRGV TRHRWTGRYE AHLWDKSTWN QNQNKKGKQG
101: AYDDEEAAAR AYDLAALKYW GPGTIINFPV TDYSRDLEEM QSLSREEYLA TLRRKSSGFS RGIAKYRGLQ SRWEASASRM PGPEYFSNLH YGTGDDRGAE
201: GDFLGSFCLE RKIDLTGYIK WWGVNKPRQP ESSSKASEDA KVEDAGSELK TLEHTSQATE PYKAPNLGVL QRKEKQIASP SSTSSALSIL SASPAYKSLE
301: EKVMKIQESS STRENDENAN RNITKKPAVS HGVALGSGGG VAPAAALSLQ KSMYPLSSLL TAPLLSNYNA LDPLGDRILW TPFLPPGSSH TSEVTKTETS
401: CSTYSYLPQE K
101: AYDDEEAAAR AYDLAALKYW GPGTIINFPV TDYSRDLEEM QSLSREEYLA TLRRKSSGFS RGIAKYRGLQ SRWEASASRM PGPEYFSNLH YGTGDDRGAE
201: GDFLGSFCLE RKIDLTGYIK WWGVNKPRQP ESSSKASEDA KVEDAGSELK TLEHTSQATE PYKAPNLGVL QRKEKQIASP SSTSSALSIL SASPAYKSLE
301: EKVMKIQESS STRENDENAN RNITKKPAVS HGVALGSGGG VAPAAALSLQ KSMYPLSSLL TAPLLSNYNA LDPLGDRILW TPFLPPGSSH TSEVTKTETS
401: CSTYSYLPQE K
001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.