CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
mitochondrion 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G063070.1	Barley	nucleus	40.1	84.69
KXG24410	Sorghum	mitochondrion	24.15	60.98
Zm00001d014670_P001	Maize	endoplasmic reticulum, golgi	35.27	39.04
VIT_04s0023g00970.t01	Wine grape	nucleus	21.26	37.61
CDY01432	Canola	nucleus	24.64	14.17
CDY12814	Canola	nucleus	24.64	14.13
CDY71179	Canola	nucleus	15.46	14.1
CDY71282	Canola	nucleus	15.46	13.73
CDY35402	Canola	nucleus	26.57	13.38
CDX69282	Canola	nucleus	25.12	13.0
CDX79921	Canola	nucleus	27.05	12.99
CDY23833	Canola	nucleus	26.57	12.94
CDY22537	Canola	nucleus	26.57	12.85
CDY62228	Canola	nucleus	24.64	11.83
CDY29538	Canola	nucleus	24.64	11.81
CDY04573	Canola	nucleus	23.19	10.57
CDY15760	Canola	nucleus	23.19	10.57
CDY68119	Canola	nucleus	17.39	10.5
CDX73419	Canola	nucleus	17.39	10.47
CDY07510	Canola	nucleus	16.43	10.37
PGSC0003DMT400023709	Potato	nucleus	10.63	10.28
CDX95767	Canola	nucleus	19.32	9.59
CDY09223	Canola	nucleus	19.81	9.51
CDY31576	Canola	nucleus	20.29	9.29
CDX80199	Canola	nucleus	20.29	9.25
CDX83296	Canola	nucleus	19.32	9.17
Solyc03g123430.2.1	Tomato	nucleus	21.74	8.77
Os06t0658000-00	Rice	endoplasmic reticulum, extracellular	2.9	3.28
PGSC0003DMT400055211	Potato	nucleus	3.86	2.22
PGSC0003DMT400035808	Potato	nucleus, plastid	1.45	1.96
PGSC0003DMT400023711	Potato	nucleus	1.45	1.09
CDY19560	Canola	nucleus	0.0	0.0

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	GO:A0A078K1C6	UniProt:A0A078K1C6	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDY71682	ProteinID:CDY71682	ProteinID:CDY71682.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00018081001	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF33	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0004EE3435	:	:	:	:

Description

BnaCnng73930DBnaCnng73930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K1C6]

Coordinates

chrLK046920:-:61..2388

Molecular Weight (calculated)

23935.1 Da

IEP (calculated)

10.707

GRAVY (calculated)

-0.439

Length

207 amino acids

Sequence
(BLAST)

001: MIIIRFLSIT TVVITTVRES STITTERRQI LRRRSLLWQW KDQILLTRRS LIRLDKGLPF TEELQDIDGR EGMKLIYGII AVGEKVRPGK DVKSLHLLRC
101: FCLYLGGYDK EDKAARAYDL AALKYWNTAA TTNFPITNYS KELEEMKHMT KQEFIASLRR KSSGFSRGAS MYRGVTRHHQ QGRWQARIGR VAGNKDLYLG
201: TFGNSNQ

Best Arabidopsis Sequence Match ( AT5G10510.1 )
(BLAST)

001: MEMLRSSDQS QFVSYDASSA ASSSPYLLDN FYGWSNQKPQ EFFKEEAQLA AAASMADSTI LTTFVDPQSH HSQNHIPKLE DFLGDSSSIV RYSDNSQTDT
101: QDSSLTQIYD PRHHHNQTGF YSDHHDFKTM AGFQSAFSTN SGSEVDDSAS IGRTHLAGDY LGHVVESSGP ELGFHGGSTG ALSLGVNVNN NTNHRNDNDN
201: HYRGNNNGER INNNNNNDNE KTDSEKEKAV VAVETSDCSN KKIADTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ ARKGRQVYLG GYDKEDKAAR
301: AYDLAALKYW NATATTNFPI TNYSKEVEEM KHMTKQEFIA SLRRKSSGFS RGASIYRGVT RHHQQGRWQA RIGRVAGNKD LYLGTFATEE EAAEAYDIAA
401: IKFRGINAVT NFEMNRYDVE AIMKSALPIG GAAKRLKLSL EAAASSEQKP ILGHHQLHHF QQQQQQQQLQ LQSSPNHSSI NFALCPNSAV QSQQIIPCGI
501: PFEAAALYHH HQQQQQHQQQ QQQQNFFQHF PANAASDSTG SNNNSNVQGT MGLMAPNPAE FFLWPNQSY

Arabidopsis Description

AIL6AINTEGUMENTA-like 6 [Source:UniProtKB/TrEMBL;Acc:F4KGW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.