Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011741.1-P | Field mustard | nucleus | 97.25 | 89.84 |
| CDY71179 | Canola | nucleus | 48.75 | 85.9 |
| CDY29538 | Canola | nucleus | 90.75 | 84.03 |
| CDY62228 | Canola | nucleus | 90.0 | 83.53 |
| CDY71282 | Canola | nucleus | 48.0 | 82.4 |
| AT4G36920.1 | Thale cress | nucleus | 88.5 | 81.94 |
| TraesCS2A01G514200.1 | Wheat | nucleus | 51.75 | 56.1 |
| Solyc03g044300.2.1 | Tomato | nucleus | 55.5 | 55.36 |
| CDY12814 | Canola | nucleus | 49.75 | 55.12 |
| CDY01432 | Canola | nucleus | 49.0 | 54.44 |
| GSMUA_Achr8P18550_001 | Banana | endoplasmic reticulum, nucleus | 48.0 | 53.04 |
| VIT_07s0031g00220.t01 | Wine grape | nucleus | 63.75 | 50.3 |
| KRH28441 | Soybean | nucleus | 60.5 | 48.79 |
| Solyc02g093150.2.1 | Tomato | nucleus | 54.0 | 48.43 |
| PGSC0003DMT400016585 | Potato | nucleus | 57.0 | 48.0 |
| PGSC0003DMT400010231 | Potato | nucleus | 60.75 | 47.37 |
| Os04t0649100-03 | Rice | nucleus | 53.75 | 46.74 |
| Solyc02g064960.2.1 | Tomato | nucleus | 58.25 | 46.23 |
| PGSC0003DMT400065501 | Potato | nucleus | 57.75 | 45.74 |
| Zm00001d026448_P001 | Maize | nucleus | 46.25 | 44.79 |
| TraesCS2D01G515800.1 | Wheat | nucleus | 53.0 | 43.62 |
| TraesCS2B01G542400.2 | Wheat | nucleus | 52.75 | 43.59 |
| CDY04573 | Canola | nucleus | 48.25 | 42.51 |
| CDY15760 | Canola | nucleus | 48.0 | 42.29 |
| CDX95767 | Canola | nucleus | 42.0 | 40.29 |
| Zm00001d002075_P001 | Maize | nucleus | 53.5 | 40.15 |
| OQU82446 | Sorghum | endoplasmic reticulum, vacuole | 38.75 | 39.14 |
| CDX83296 | Canola | nucleus | 42.0 | 38.53 |
| CDY68119 | Canola | nucleus | 32.25 | 37.61 |
| CDX73419 | Canola | nucleus | 32.25 | 37.5 |
| CDY07510 | Canola | nucleus | 30.5 | 37.2 |
| CDY31576 | Canola | nucleus | 36.5 | 32.3 |
| CDX80199 | Canola | nucleus | 36.5 | 32.16 |
| CDY09223 | Canola | nucleus | 34.5 | 32.02 |
| CDY71682 | Canola | nucleus | 13.0 | 25.12 |
| CDY23833 | Canola | nucleus | 22.25 | 20.94 |
| CDY22537 | Canola | nucleus | 22.25 | 20.79 |
| CDX79921 | Canola | nucleus | 22.25 | 20.65 |
| CDY35402 | Canola | nucleus | 20.75 | 20.19 |
| CDY19560 | Canola | nucleus | 1.75 | 6.8 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | GO:A0A078BY75 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDX69282 | ProteinID:CDX69282 | ProteinID:CDX69282.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00131105001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF18 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EEF936 | SEG:seg | : | : |
Description
BnaC01g01710D
Coordinates
chrLK031789:-:3881981..3884227
Molecular Weight (calculated)
44095.1 Da
IEP (calculated)
6.441
GRAVY (calculated)
-0.658
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MWDLNDSPHQ TLVEEESEEL CYSSPGKRVG SFSNSSSSAV VIEDGSDDDE PNRVRPNNPL VTHQFFPEME TSVGDDGGGG PGSGFPRSHW FGVKFCQSDL
101: ATGSSAGKPA TVAAVVEPAQ PLKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF TIEDYDDDLK
201: QMTNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE VEAARAYDKA AIKCNGKDAV TNFDPSIYDD ELNAESSGNS
301: IQQDHNLDLS LGNSVNSKQK GQDMRLKMNQ QETLHPNEIL GLGQTGMVNH IPNSNLQFPG SSNIGGGGGF SLFPVAENHR FDGRTTTNQV LANAAFFFFG
101: ATGSSAGKPA TVAAVVEPAQ PLKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF TIEDYDDDLK
201: QMTNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE VEAARAYDKA AIKCNGKDAV TNFDPSIYDD ELNAESSGNS
301: IQQDHNLDLS LGNSVNSKQK GQDMRLKMNQ QETLHPNEIL GLGQTGMVNH IPNSNLQFPG SSNIGGGGGF SLFPVAENHR FDGRTTTNQV LANAAFFFFG
001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS
Arabidopsis Description
AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.