Factsheet for TraesCS2B01G542400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G514200.1	Wheat	nucleus	72.31	94.85
TraesCS2D01G515800.1	Wheat	nucleus	95.04	94.65
Os04t0649100-03	Rice	nucleus	77.07	81.09
Zm00001d026448_P001	Maize	nucleus	65.08	76.27
OQU82446	Sorghum	endoplasmic reticulum, vacuole	55.99	68.43
Zm00001d002075_P001	Maize	nucleus	73.97	67.17
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	39.88	53.31
CDX69282	Canola	nucleus	43.59	52.75
CDY71282	Canola	nucleus	25.21	52.36
CDY71179	Canola	nucleus	24.38	51.98
Bra011741.1-P	Field mustard	nucleus	46.28	51.73
Solyc03g044300.2.1	Tomato	nucleus	42.77	51.62
AT4G36920.1	Thale cress	nucleus	46.07	51.62
Bra017809.1-P	Field mustard	nucleus	46.07	51.62
CDY29538	Canola	nucleus	46.07	51.62
CDY62228	Canola	nucleus	45.66	51.28
VIT_07s0031g00220.t01	Wine grape	nucleus	50.0	47.73
Solyc02g093150.2.1	Tomato	nucleus	43.8	47.53
PGSC0003DMT400016585	Potato	nucleus	44.21	45.05
PGSC0003DMT400010231	Potato	nucleus	47.52	44.83
KRH28441	Soybean	nucleus	44.63	43.55
Solyc02g064960.2.1	Tomato	nucleus	44.01	42.26
PGSC0003DMT400065501	Potato	nucleus	43.8	41.98
TraesCS7B01G440400.1	Wheat	nucleus	34.71	41.48
TraesCS5B01G486900.1	Wheat	nucleus	20.87	38.7
TraesCS1B01G076300.1	Wheat	nucleus	40.29	38.09
TraesCS6B01G334700.1	Wheat	nucleus	20.04	25.87
TraesCS7B01G186900.1	Wheat	nucleus	17.56	24.08
TraesCS1B01G254300.1	Wheat	nucleus	19.01	21.8

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010073	GO:GO:0010093
GO:GO:0048316	GO:GO:0048481	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF18	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS2B01G542400	EnsemblPlants:TraesCS2B01G542400.2
TIGR:cd00018	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:740215359..740218064

Molecular Weight (calculated)

51077.8 Da

IEP (calculated)

7.144

GRAVY (calculated)

-0.645

Length

484 amino acids

Sequence
(BLAST)

001: MWDLNDSPAA EAAHAPLSPS VDDSGASSSS AAAVVEIPDD GEDDSAEAVV TRQFFPPAAP GEGAAGNGRA AWLRLAGAPA PAVAAAAAAA AGGGGGGGGG
101: PAASAAAKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGME ADINFSLEDY DDIKQMGNLT KEEFVHVLRR
201: QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEEEAARS YDRAAIKCNG KDAVTNFDPS TYAEEFEPTA SAGDAEQNLD LSLGSSAGSN
301: KRGSLDGGDD DGAAGPDQRV PMAFELDWQT AAARSTKAKF DQSFTHHQMP PPLLQASHMP FSPRHHQFMG NGDPGTAGGP SLTVGAGGGG GHWPLPPHHQ
401: YQPPPPPQQQ QQQQQRLHGW GNVVPGTSWQ PPQPPPHHQA GPPPNNAAAA AAAAAASSRF PPYIATQAQS WLQKNGFHSL ARPT

Best Arabidopsis Sequence Match ( AT4G36920.2 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.