Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017809.1-P | Field mustard | nucleus | 99.77 | 99.77 |
| CDY62228 | Canola | nucleus | 97.22 | 97.45 |
| CDY71282 | Canola | nucleus | 49.77 | 92.27 |
| CDY71179 | Canola | nucleus | 47.92 | 91.19 |
| CDX69282 | Canola | nucleus | 84.03 | 90.75 |
| AT4G36920.1 | Thale cress | nucleus | 87.96 | 87.96 |
| TraesCS2A01G514200.1 | Wheat | nucleus | 50.0 | 58.54 |
| CDY12814 | Canola | nucleus | 47.92 | 57.34 |
| CDY01432 | Canola | nucleus | 47.22 | 56.67 |
| Solyc03g044300.2.1 | Tomato | nucleus | 52.31 | 56.36 |
| GSMUA_Achr8P18550_001 | Banana | endoplasmic reticulum, nucleus | 46.06 | 54.97 |
| VIT_07s0031g00220.t01 | Wine grape | nucleus | 60.19 | 51.28 |
| Solyc02g093150.2.1 | Tomato | nucleus | 51.85 | 50.22 |
| KRH28441 | Soybean | nucleus | 57.64 | 50.2 |
| PGSC0003DMT400016585 | Potato | nucleus | 53.94 | 49.05 |
| PGSC0003DMT400010231 | Potato | nucleus | 57.64 | 48.54 |
| Os04t0649100-03 | Rice | nucleus | 51.16 | 48.04 |
| Solyc02g064960.2.1 | Tomato | nucleus | 55.79 | 47.82 |
| Zm00001d026448_P001 | Maize | nucleus | 45.37 | 47.46 |
| PGSC0003DMT400065501 | Potato | nucleus | 55.09 | 47.13 |
| TraesCS2B01G542400.2 | Wheat | nucleus | 51.62 | 46.07 |
| TraesCS2D01G515800.1 | Wheat | nucleus | 51.62 | 45.88 |
| CDY04573 | Canola | nucleus | 45.83 | 43.61 |
| CDY15760 | Canola | nucleus | 45.6 | 43.39 |
| OQU82446 | Sorghum | endoplasmic reticulum, vacuole | 38.89 | 42.42 |
| Zm00001d002075_P001 | Maize | nucleus | 52.08 | 42.21 |
| CDX95767 | Canola | nucleus | 40.05 | 41.49 |
| CDY07510 | Canola | nucleus | 30.32 | 39.94 |
| CDX83296 | Canola | nucleus | 40.05 | 39.68 |
| CDY68119 | Canola | nucleus | 31.25 | 39.36 |
| CDX73419 | Canola | nucleus | 31.25 | 39.24 |
| CDY09223 | Canola | nucleus | 33.56 | 33.64 |
| CDY31576 | Canola | nucleus | 34.95 | 33.41 |
| CDX80199 | Canola | nucleus | 34.95 | 33.26 |
| CDY71682 | Canola | nucleus | 11.81 | 24.64 |
| CDY23833 | Canola | nucleus | 21.06 | 21.41 |
| CDY22537 | Canola | nucleus | 21.06 | 21.26 |
| CDX79921 | Canola | nucleus | 21.06 | 21.11 |
| CDY35402 | Canola | nucleus | 19.68 | 20.68 |
| CDY19560 | Canola | nucleus | 3.24 | 13.59 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | GO:A0A078GY94 | UniProt:A0A078GY94 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY29538 | ProteinID:CDY29538 | ProteinID:CDY29538.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00043244001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF18 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EE279D | SEG:seg | : | : |
Description
BnaA03g53830DBnaA03g53830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GY94]
Coordinates
chrLK032239:-:73527..76189
Molecular Weight (calculated)
47940.4 Da
IEP (calculated)
7.281
GRAVY (calculated)
-0.770
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MWDLNDSPHQ TVRQEESEEF CYSSPGKRVG SFSNSSSSAV VIEDGSDDDE PNRVRPNNPL ITHQFFPEME SSVGDNGGGG TGPGFPRSHW FGVQFSQSDL
101: ATGSSVGKPA TVGAVVEPTQ PLKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF NIEDYDNDMK
201: QMTNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE VEAARAYDKA AIKCNGKDAV TNFDSSIYDE ELNAESSGNP
301: IQQDHNLDLS LGNSVNSKHK GQDMRLKMNQ QDSLHSNEIL GLGQTGMVNY IPNSVHQFPG SSNIHRGGGF SLFPVTENHQ FEGRTTANQV LANAAASSGF
401: SPHNHNQIFN STPTSHQNWL QTNGFQPPLM RP
101: ATGSSVGKPA TVGAVVEPTQ PLKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF NIEDYDNDMK
201: QMTNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE VEAARAYDKA AIKCNGKDAV TNFDSSIYDE ELNAESSGNP
301: IQQDHNLDLS LGNSVNSKHK GQDMRLKMNQ QDSLHSNEIL GLGQTGMVNY IPNSVHQFPG SSNIHRGGGF SLFPVTENHQ FEGRTTANQV LANAAASSGF
401: SPHNHNQIFN STPTSHQNWL QTNGFQPPLM RP
001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS
Arabidopsis Description
AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.