Factsheet for Solyc02g093150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010231	Potato	nucleus	95.74	83.24
Solyc03g044300.2.1	Tomato	nucleus	56.73	63.09
CDY71282	Canola	nucleus	30.04	57.51
CDY71179	Canola	nucleus	29.15	57.27
VIT_07s0031g00220.t01	Wine grape	nucleus	64.8	57.0
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	44.62	54.97
TraesCS2A01G514200.1	Wheat	nucleus	44.84	54.2
CDX69282	Canola	nucleus	48.43	54.0
Solyc02g064960.2.1	Tomato	nucleus	60.76	53.77
Bra011741.1-P	Field mustard	nucleus	52.02	53.58
KRH77030	Soybean	nucleus	59.42	52.79
AT4G36920.1	Thale cress	nucleus	50.9	52.55
CDY29538	Canola	nucleus	50.22	51.85
Bra017809.1-P	Field mustard	nucleus	50.22	51.85
CDY62228	Canola	nucleus	50.0	51.74
KRH04560	Soybean	nucleus	60.09	50.38
KRH57898	Soybean	nucleus	59.42	49.72
Os04t0649100-03	Rice	nucleus	49.1	47.61
Zm00001d026448_P001	Maize	nucleus	43.27	46.73
OQU82446	Sorghum	endoplasmic reticulum, vacuole	40.36	45.45
TraesCS2D01G515800.1	Wheat	nucleus	47.76	43.83
TraesCS2B01G542400.2	Wheat	nucleus	47.53	43.8
Zm00001d002075_P001	Maize	nucleus	49.55	41.46
Solyc06g075510.2.1	Tomato	nucleus	42.6	40.08
Solyc11g072600.1.1	Tomato	nucleus	42.38	39.29
Solyc04g049800.2.1	Tomato	nucleus	34.75	38.94
Solyc10g084340.1.1	Tomato	nucleus	39.69	38.31
Solyc09g007260.2.1	Tomato	nucleus	39.01	38.24
Solyc02g030200.1.1	Tomato	nucleus	3.81	29.82
Solyc02g030210.2.1	Tomato	nucleus	16.82	21.37
Solyc03g123430.2.1	Tomato	nucleus	21.3	18.52

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:K4BDB1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF18	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc02g093150.2	EnsemblPlants:Solyc02g093150.2.1	UniParc:UPI0002768313
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:54077823..54080780

Molecular Weight (calculated)

50077.2 Da

IEP (calculated)

9.011

GRAVY (calculated)

-0.783

Length

446 amino acids

Sequence
(BLAST)

001: MVGLGNGDEE QPVTRQFFPV DESEMGGVAA ENGCPNFPRA HWVGVKFYQT ETLGNTGLAR PVDMVQQQQQ PIKKSRRGPR SRSSQYRGVT FYRRTGRWES
101: HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF SLEDYESDLK QMTSLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK
201: YVYLGLFDTE IEAARAYDKA AIKCNGKDAV TNFDPSIYEN ELNSIESTDN VADHNLDLSL GGSSSKQGSQ ELGDNRGQNS SSIMQLDIDW QRHGLRPEKQ
301: SALIDARRRE NRYNETETLQ LLSQTHLHSP ASLKHNNNNN SQVQRFGQFM RPGDQSHMIQ MFPQQFGSSN YQIQFPSGSN GGRIGATNVR DLSLAATSNG
401: SSQWQSNFPP QIFVAAAASS GFPQQIVRPQ NWSSENGFHH SLMRPS

Best Arabidopsis Sequence Match ( AT4G36920.2 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.