CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026448_P001	Maize	nucleus	68.43	65.62
Zm00001d002075_P001	Maize	nucleus	82.58	61.35
Os04t0649100-03	Rice	nucleus	68.69	59.13
TraesCS2D01G515800.1	Wheat	nucleus	69.44	56.58
TraesCS2B01G542400.2	Wheat	nucleus	68.43	55.99
TraesCS2A01G514200.1	Wheat	nucleus	51.01	54.74
CDY71282	Canola	nucleus	29.8	50.64
CDY71179	Canola	nucleus	28.79	50.22
GSMUA_Achr8P18550_001	Banana	endoplasmic reticulum, nucleus	38.64	42.27
Solyc02g093150.2.1	Tomato	nucleus	45.45	40.36
KXG24410	Sorghum	mitochondrion	8.33	40.24
Solyc03g044300.2.1	Tomato	nucleus	39.9	39.4
CDY62228	Canola	nucleus	42.42	38.98
CDY29538	Canola	nucleus	42.42	38.89
Bra017809.1-P	Field mustard	nucleus	42.42	38.89
AT4G36920.1	Thale cress	nucleus	42.42	38.89
CDX69282	Canola	nucleus	39.14	38.75
Bra011741.1-P	Field mustard	nucleus	42.17	38.57
VIT_07s0031g00220.t01	Wine grape	nucleus	47.47	37.08
EER87748	Sorghum	nucleus	17.68	35.71
PGSC0003DMT400010231	Potato	nucleus	46.21	35.67
KRH28441	Soybean	nucleus	44.44	35.48
OQU77289	Sorghum	nucleus	38.64	35.01
PGSC0003DMT400016585	Potato	nucleus	41.16	34.32
EER93202	Sorghum	nucleus	36.36	33.33
Solyc02g064960.2.1	Tomato	nucleus	40.91	32.14
PGSC0003DMT400065501	Potato	nucleus	40.91	32.08
OQU76762	Sorghum	nucleus	34.6	29.03
EER96101	Sorghum	plastid	36.87	27.09
KXG24541	Sorghum	nucleus	17.68	22.08
KXG30761	Sorghum	nucleus	19.7	21.37
EES19464	Sorghum	nucleus	18.69	17.79

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	UniProt:A0A1Z5RGF5	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:OQU82446	ProteinID:OQU82446	ProteinID:OQU82446.1	PFAM:PF00847
PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF18	SMART:SM00380	EnsemblPlantsGene:SORBI_3006G240700	SUPFAM:SSF54171
SignalP:SignalP-noTM	UniParc:UPI000B8B9951	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:58150994..58154240

Molecular Weight (calculated)

42111.3 Da

IEP (calculated)

7.462

GRAVY (calculated)

-0.476

Length

396 amino acids

Sequence
(BLAST)

001: MPSLSLFLCV PLSLSYSYLS AVSHSPCSLL VLVQCRDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVEAD INFSLEDYQD DMKQMGHLSK EEFVHVLRRQ
101: STGFPRGSSK FRGVTLHKCG RWEARMGQFL GKKYVYLGLF DTEEEAARAY DRAAIKCNGK DAVTNFDPSI YAEELEPAAS TGGGSGGGDD EHNLDLSLGS
201: SAGNKRGSLD GGGGGDDETS DQRVPMAFDI DWQTAAPRST KAKQACHVST TGWQLDASSK QPQMLPPPLP PPPALQVAHH LPLPFSPRHP QFLSNGDPGT
301: AGGLSLAIGG AGGGGGGGHW TPQLQHQQQH HQQRLHGGVW ANGGGTSWPP PPHPPPPTTA ATAAAASSRF PPYVVTTQGP AGWVQKNGFH SLARPT

Best Arabidopsis Sequence Match ( AT4G36920.1 )
(BLAST)

001: MWDLNDAPHQ TQREEESEEF CYSSPSKRVG SFSNSSSSAV VIEDGSDDDE LNRVRPNNPL VTHQFFPEMD SNGGGVASGF PRAHWFGVKF CQSDLATGSS
101: AGKATNVAAA VVEPAQPLKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFNIDD YDDDLKQMTN
201: LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVYL GLFDTEVEAA RAYDKAAIKC NGKDAVTNFD PSIYDEELNA ESSGNPTTPQ
301: DHNLDLSLGN SANSKHKSQD MRLRMNQQQQ DSLHSNEVLG LGQTGMLNHT PNSNHQFPGS SNIGSGGGFS LFPAAENHRF DGRASTNQVL TNAAASSGFS
401: PHHHNQIFNS TSTPHQNWLQ TNGFQPPLMR PS

Arabidopsis Description

AP2Floral homeotic protein APETALA 2 [Source:UniProtKB/Swiss-Prot;Acc:P47927]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.