CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87748	Sorghum	nucleus	44.68	98.47
Zm00001d034629_P001	Maize	nucleus	95.14	94.92
HORVU5Hr1G112440.1	Barley	nucleus	76.39	75.0
TraesCS5A01G473800.1	Wheat	nucleus	77.55	74.94
TraesCS5D01G486600.2	Wheat	nucleus	77.55	74.44
Os03t0818800-01	Rice	nucleus	72.45	72.12
TraesCS5B01G486900.1	Wheat	nucleus	43.06	71.26
EER96101	Sorghum	plastid	63.89	51.21
OQU77289	Sorghum	nucleus	48.38	47.83
KXG24410	Sorghum	mitochondrion	7.87	41.46
OQU82446	Sorghum	endoplasmic reticulum, vacuole	33.33	36.36
OQU76762	Sorghum	nucleus	37.04	33.9
KXG30761	Sorghum	nucleus	21.76	25.75
KXG24541	Sorghum	nucleus	17.82	24.29
EES19464	Sorghum	nucleus	21.53	22.36

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	EntrezGene:8057377	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
UniProt:C5WV31	InterPro:DNA-bd_dom_sf	EnsemblPlants:EER93202	ProteinID:EER93202	ProteinID:EER93202.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF67	SMART:SM00380
EnsemblPlantsGene:SORBI_3001G036800	SUPFAM:SSF54171	UniParc:UPI0001A829E9	RefSeq:XP_002466204.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:2736885..2740680

Molecular Weight (calculated)

47486.1 Da

IEP (calculated)

7.179

GRAVY (calculated)

-0.678

Length

432 amino acids

Sequence
(BLAST)

001: MVLDLNVASP ADSGTSSSSV LNSANGGFRF GLLGSPVDDD DCSGEMAPGA STGFMTRQLF PSPTPPAEPE PEPPAAPVPV WQPRRAEDLG VAQRPVAPAK
101: KTRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG LEADINFSLG DYEDDLKQMR NWTKEEFVHI LRRQSTGFAR
201: GSSKYRGVTL HKCGRWEARM GQLLGKKYIY LGLFDSEVEA ARAYDRAALR FNGREAVTNF EPSSYNAGDN SLPDTETEAI VDRDAIDLDL RISQPNVQDP
301: KRDYTLTSLQ PTCDSPESSN TMASQPMSSS SPWPGYQQNP AVSSHHQHLY SSACHGSFPN HQVQERPMER RPELGAQPFP TWAWQTQGSP HVPLHHSAAS
401: SGFSTAAGAN GGMPLPSHPP APFPTTNPFF FP

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.