Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68119 | Canola | nucleus | 97.09 | 97.38 |
| AT3G54990.1 | Thale cress | nucleus | 83.43 | 82.95 |
| CDY07510 | Canola | nucleus | 77.91 | 81.71 |
| CDY01432 | Canola | nucleus | 35.47 | 33.89 |
| CDY12814 | Canola | nucleus | 35.47 | 33.8 |
| CDX95767 | Canola | nucleus | 40.7 | 33.57 |
| CDX83296 | Canola | nucleus | 41.28 | 32.57 |
| CDX69282 | Canola | nucleus | 37.5 | 32.25 |
| CDY15760 | Canola | nucleus | 41.57 | 31.5 |
| CDY62228 | Canola | nucleus | 39.24 | 31.32 |
| CDY29538 | Canola | nucleus | 39.24 | 31.25 |
| Zm00001d010987_P001 | Maize | nucleus | 34.88 | 31.09 |
| CDY04573 | Canola | nucleus | 40.99 | 31.06 |
| OQU77289 | Sorghum | nucleus | 38.66 | 30.43 |
| VIT_13s0019g03550.t01 | Wine grape | nucleus | 43.9 | 30.38 |
| CDY09223 | Canola | nucleus | 37.5 | 29.93 |
| CDX80199 | Canola | nucleus | 39.24 | 29.74 |
| CDY31576 | Canola | nucleus | 38.66 | 29.42 |
| Zm00001d035512_P001 | Maize | nucleus | 43.31 | 29.16 |
| TraesCS1B01G076300.1 | Wheat | nucleus | 43.31 | 29.1 |
| TraesCS1D01G059200.1 | Wheat | nucleus | 43.02 | 28.96 |
| TraesCS1A01G058400.1 | Wheat | nucleus | 42.73 | 28.82 |
| HORVU1Hr1G011800.4 | Barley | nucleus | 42.73 | 28.6 |
| Os05t0121600-01 | Rice | nucleus | 41.57 | 27.93 |
| CDY71179 | Canola | nucleus | 15.99 | 24.23 |
| CDY71282 | Canola | nucleus | 15.99 | 23.61 |
| CDY22537 | Canola | nucleus | 23.55 | 18.93 |
| CDY23833 | Canola | nucleus | 23.26 | 18.82 |
| CDX79921 | Canola | nucleus | 22.97 | 18.33 |
| CDY35402 | Canola | nucleus | 21.51 | 18.0 |
| CDY71682 | Canola | nucleus | 10.47 | 17.39 |
| CDY19560 | Canola | nucleus | 4.07 | 13.59 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | GO:A0A078CB29 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDX73419 | ProteinID:CDX73419 | ProteinID:CDX73419.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00108914001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF46 | SMART:SM00380 |
| SUPFAM:SSF54171 | UniParc:UPI0004EE3CC3 | SEG:seg | : | : | : |
Description
BnaC08g25840D
Coordinates
chrLK031799:+:261917..267037
Molecular Weight (calculated)
38336.1 Da
IEP (calculated)
9.841
GRAVY (calculated)
-0.603
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDLSLGMFS NYGEDQDRKV PFVSTAGDEE YNISSSSSKD SVAGKDFITF GILKRDDDVV PPPPPSRETG DLFPVADARR NIEFAADDGH WLRLSSLQRN
101: KQQVAKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA YAAARAYDRA AIKFRGLDAD INFVVEDYKQ DLDKMKNLNK VEFVQTLRRE
201: SASFGRGSSK YKGLTLQKCT QLKTHHDQIH LFQNRGWDAA AIKYNNELGK GGVMKSGAPI KGNIHNDLEL SLGISSSSQN IKLTTSDYYK GINHSTMGLF
301: GKHSPIYLPV TTMNPLKTVA ASSGFPFITM TTSSSSSMST SFDP
101: KQQVAKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA YAAARAYDRA AIKFRGLDAD INFVVEDYKQ DLDKMKNLNK VEFVQTLRRE
201: SASFGRGSSK YKGLTLQKCT QLKTHHDQIH LFQNRGWDAA AIKYNNELGK GGVMKSGAPI KGNIHNDLEL SLGISSSSQN IKLTTSDYYK GINHSTMGLF
301: GKHSPIYLPV TTMNPLKTVA ASSGFPFITM TTSSSSSMST SFDP
001: MLDLNLKIFS SYNEDQDRKV PLMISTTGEE ESNSSSSSTT DSAARDAFIA FGILKRDDDL VPPPPPPPHK ETGDLFPVVA DARRNIEFSV EDSHWLNLSS
101: LQRNTQKMVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAYAAARA YDRAAIKFRG LDADINFVVD DYRHDIDKMK NLNKVEFVQT
201: LRRESASFGR GSSKYKGLAL QKCTQFKTHD QIHLFQNRGW DAAAIKYNEL GKGEGAMKFG AHIKGNGHND LELSLGISSS SESIKLTTGD YYKGINRSTM
301: GLYGKQSSIF LPMATMKPLK TVAASSGFPF ISMTSSSSSM SNCFDP
101: LQRNTQKMVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG FDTAYAAARA YDRAAIKFRG LDADINFVVD DYRHDIDKMK NLNKVEFVQT
201: LRRESASFGR GSSKYKGLAL QKCTQFKTHD QIHLFQNRGW DAAAIKYNEL GKGEGAMKFG AHIKGNGHND LELSLGISSS SESIKLTTGD YYKGINRSTM
301: GLYGKQSSIF LPMATMKPLK TVAASSGFPF ISMTSSSSSM SNCFDP
Arabidopsis Description
SMZAP2-like ethylene-responsive transcription factor SMZ [Source:UniProtKB/Swiss-Prot;Acc:Q6PV68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.