Factsheet for Os05t0121600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0747400-01
Os06t0226700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39250.1	Os02t0747400-01	AT3G47620.1	21798944
AT2G39250.1	Os06t0226700-01	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77289	Sorghum	nucleus	60.16	70.48
HORVU1Hr1G011800.4	Barley	nucleus	67.77	67.51
TraesCS1D01G059200.1	Wheat	nucleus	66.99	67.12
TraesCS1A01G058400.1	Wheat	nucleus	66.8	67.06
TraesCS1B01G076300.1	Wheat	nucleus	66.99	66.99
Zm00001d035512_P001	Maize	nucleus	57.23	57.34
Os03t0818800-01	Rice	nucleus	42.77	50.46
Os07t0235800-01	Rice	nucleus	41.8	49.08
PGSC0003DMT400065313	Potato	nucleus	46.88	48.1
Solyc04g049800.2.1	Tomato	nucleus	36.91	47.49
PGSC0003DMT400031401	Potato	nucleus	37.3	46.93
Solyc11g072600.1.1	Tomato	nucleus	43.95	46.78
Os04t0649100-03	Rice	nucleus	40.23	44.78
VIT_13s0019g03550.t01	Wine grape	nucleus	43.36	44.67
CDY68119	Canola	nucleus	27.93	41.69
Bra007123.1-P	Field mustard	nucleus	27.93	41.69
CDX73419	Canola	nucleus	27.93	41.57
CDY07510	Canola	nucleus	26.56	41.46
AT3G54990.1	Thale cress	nucleus	27.93	41.33
KRH70384	Soybean	nucleus	32.23	39.66
CDX80199	Canola	nucleus	34.96	39.43
Bra020262.1-P	Field mustard	nucleus	33.01	39.39
CDY31576	Canola	nucleus	34.77	39.38
Bra002510.1-P	Field mustard	nucleus	34.77	39.38
Os06t0639200-01	Rice	nucleus	25.59	39.22
KRH33335	Soybean	nucleus	31.45	38.98
CDY09223	Canola	nucleus	32.81	38.98
AT2G39250.1	Thale cress	nucleus	23.63	37.23
Os08t0171100-01	Rice	cytosol, nucleus	4.1	35.59
AT5G60120.2	Thale cress	nucleus	34.77	35.11
Os02t0747600-01	Rice	nucleus	18.16	27.51
Os05t0389000-02	Rice	nucleus	18.95	22.82
Os06t0658000-00	Rice	endoplasmic reticulum, extracellular	5.86	16.39

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	EntrezGene:4337654	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EMBL:AY685117	ProteinID:BAS92025.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlantsGene:Os05g0121600	EnsemblPlants:Os05t0121600-01
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	UniProt:Q2TQ34
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0000679B06	RefSeq:XP_015639329.1	SEG:seg	:

Description

RICE STRACH REGULATOR 1AP2/EREBP family transcription factor, Starch biosynthesis (Os05t0121600-01)

Coordinates

chr5:-:1156300..1159703

Molecular Weight (calculated)

55611.0 Da

IEP (calculated)

7.219

GRAVY (calculated)

-0.770

Length

512 amino acids

Sequence
(BLAST)

001: MELDLNNVAE GVVEKHETAA RSDSGTSESS VLNGEASGAA IAPAEEGSSS TPPSPPPPPA AVLEFSILRS SASASGENDA DDDEEEEATP SPPPHHQHQQ
101: LLVTRELFPS AAPSPQHWAE LGFLRPDPPR PHPDIRILAH APPPAPPPPP PQPQPQAAKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF
201: DTAHAAARAY DRAAIKFRGV EADINFNLSD YEEDMRQMKS LSKEEFVHVL RRQSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKYIYL GLFDSEVEAA
301: RAYDKAAIKC NGREAVTNFE PSTYDGELPT DAAAQGADVD LNLRISQPAA SQQSPKRDSG SLGLQIHHGS FEGSEFKRAK NDAAPSELAS RPHRFPLLTE
401: HPPIWTAQPH PLFPNNEDAS RSSDQKRKPS EGVAVPSWAW KQVSHHHPAP PHTLPLPFFS SSSSSPSSSS AAASSGFSKA ATTAAAAQHT ATLRFDPTAP
501: SSSSSSRHHH HH

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.