Factsheet for PGSC0003DMT400065313

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072600.1.1	Tomato	nucleus	90.78	94.18
PGSC0003DMT400016881	Potato	nucleus	33.47	65.23
PGSC0003DMT400028706	Potato	nucleus	45.69	51.24
Zm00001d010987_P001	Maize	nucleus	39.28	50.78
PGSC0003DMT400071732	Potato	nucleus	46.49	50.77
OQU77289	Sorghum	nucleus	43.89	50.11
PGSC0003DMT400031401	Potato	nucleus	40.48	49.63
TraesCS1A01G058400.1	Wheat	nucleus	50.5	49.41
TraesCS1D01G059200.1	Wheat	nucleus	50.5	49.32
TraesCS1B01G076300.1	Wheat	nucleus	50.5	49.22
HORVU1Hr1G011800.4	Barley	nucleus	50.5	49.03
VIT_13s0019g03550.t01	Wine grape	nucleus	47.49	47.69
Os05t0121600-01	Rice	nucleus	48.1	46.88
Zm00001d035512_P001	Maize	nucleus	44.89	43.84
PGSC0003DMT400016585	Potato	nucleus	41.28	43.37
PGSC0003DMT400010231	Potato	nucleus	43.69	42.5
PGSC0003DMT400065501	Potato	nucleus	42.08	41.58
PGSC0003DMT400074397	Potato	nucleus	11.62	30.21
PGSC0003DMT400036707	Potato	nucleus	12.63	27.39
PGSC0003DMT400023709	Potato	nucleus	10.22	23.83
PGSC0003DMT400035808	Potato	nucleus, plastid	4.81	15.69
PGSC0003DMT400023711	Potato	nucleus	7.82	14.18
PGSC0003DMT400055211	Potato	nucleus	7.01	9.7

Protein Annotations

EntrezGene:102606071	MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M1CDR5	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400025390	PGSC:PGSC0003DMG400025390
EnsemblPlants:PGSC0003DMT400065313	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0002966E4C	RefSeq:XP_006366409.1	SEG:seg	:	:

Description

Apetala 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400025390]

Coordinates

chr11:-:44427596..44430896

Molecular Weight (calculated)

55154.5 Da

IEP (calculated)

6.652

GRAVY (calculated)

-0.762

Length

499 amino acids

Sequence
(BLAST)

001: MMLDLNLSAI YDGKHSLADE SGSSNSSARN VEASSSAGDD ETCSTRAAAG SGDMFAFNFD ILKVGGGGGG ENSRSCSNND DEEGYVITRS EFVTQQLFPV
101: DNNAELNRTH TSRTTDWVDP SVDPPNTVSF REVEQMGRLQ QQQQQQQQPV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR
201: AYDRAAIKFR GVDADINFNL SDYEEDMKQM KNLSKEEFVH VLRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI
301: KCNGREAVTN FEPSTYEGET NSNPQSEGSQ QDLDLNLGIA TSSPKEIERS SSFQYHPYDM QEATKSQMDK SGSPIVGSSH YKALPAVTSE QAHLWNGVFS
401: NLIPNYEERV SGKRIDVGTS HGHPNWAMQM HSQVGTTPMS MFSAAASSGF STPATTASAS QMSGPNNANT LNLSFASYST PSMNTTPYYY QIRPQLPPP

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.