Factsheet for PGSC0003DMT400055211

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035808	Potato	nucleus, plastid	17.17	40.52
Os06t0658000-00	Rice	endoplasmic reticulum, extracellular	17.17	33.88
PGSC0003DMT400023711	Potato	nucleus	17.73	23.27
Zm00001d013170_P001	Maize	nucleus	30.75	23.22
PGSC0003DMT400031401	Potato	nucleus	8.59	7.62
PGSC0003DMT400010231	Potato	nucleus	10.25	7.21
PGSC0003DMT400065313	Potato	nucleus	9.7	7.01
PGSC0003DMT400071732	Potato	nucleus	8.86	7.0
PGSC0003DMT400028706	Potato	nucleus	8.31	6.74
PGSC0003DMT400065501	Potato	nucleus	9.14	6.53
PGSC0003DMT400016585	Potato	nucleus	8.59	6.53
HORVU2Hr1G063070.1	Barley	nucleus	1.11	4.08
CDY71682	Canola	nucleus	2.22	3.86
KXG24410	Sorghum	mitochondrion	0.83	3.66
PGSC0003DMT400023709	Potato	nucleus	1.66	2.8
PGSC0003DMT400074397	Potato	nucleus	0.55	1.04
PGSC0003DMT400036707	Potato	nucleus	0.55	0.87
VIT_04s0023g00970.t01	Wine grape	nucleus	0.28	0.85
PGSC0003DMT400016881	Potato	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400055211	EnsemblPlantsGene:PGSC0003DMG402021429	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:AP2-like_transcript_factor
PANTHER:PTHR32467	PANTHER:PTHR32467:SF47	PGSC:PGSC0003DMG402021429	SEG:seg	UniParc:UPI00029509C4	UniProt:M1BXK0
MapMan:35.1	:	:	:	:	:

Description

AP2 domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG402021429]

Coordinates

chr2:-:42484962..42486572

Molecular Weight (calculated)

40387.6 Da

IEP (calculated)

7.009

GRAVY (calculated)

-0.867

Length

361 amino acids

Sequence
(BLAST)

001: MKSLSNDDNS SNNWLGFSLS PHINSLEGPL TDHHHSTQPG SSSDVQTSVP IRFSPTHLNY PAMYYEGDNA TLFSSLSAMP LKSDGSLCIM KGFNRSQQPQ
101: GMVSSTPKLE DFFGDAAMGS HHYEGCNRGG MAHSLHNIYY NQHQENETTN SQDFLNHIQE NARHQQQQQN YPDFSVFRGH ELYHSTEQGK TECSNLQVPT
201: MTGDEMSGMN NWVSRNYQNQ TGHALEQNMI GCMADNGAES GSVGAMTYGD FKSLSLSMSP GSQSSCVIGT QTQQISPTVT DCIAIETKKR GSEKANNQKQ
301: IVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQSRKGRQG SCQTYYIFNI F

Best Arabidopsis Sequence Match ( AT4G37750.1 )
(BLAST)

001: MKSFCDNDDN NHSNTTNLLG FSLSSNMMKM GGRGGREAIY SSSTSSAATS SSSVPPQLVV GDNTSNFGVC YGSNPNGGIY SHMSVMPLRS DGSLCLMEAL
101: NRSSHSNHHQ DSSPKVEDFF GTHHNNTSHK EAMDLSLDSL FYNTTHEPNT TTNFQEFFSF PQTRNHEEET RNYGNDPSLT HGGSFNVGVY GEFQQSLSLS
201: MSPGSQSSCI TGSHHHQQNQ NQNHQSQNHQ QISEALVETS VGFETTTMAA AKKKRGQEDV VVVGQKQIVH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL
301: WDNSFKKEGH SRKGRQVYLG GYDMEEKAAR AYDLAALKYW GPSTHTNFSA ENYQKEIEDM KNMTRQEYVA HLRRKSSGFS RGASIYRGVT RHHQHGRWQA
401: RIGRVAGNKD LYLGTFGTQE EAAEAYDVAA IKFRGTNAVT NFDITRYDVD RIMSSNTLLS GELARRNNNS IVVRNTEDQT ALNAVVEGGS NKEVSTPERL
501: LSFPAIFALP QVNQKMFGSN MGGNMSPWTS NPNAELKTVA LTLPQMPVFA AWADS

Arabidopsis Description

ANTAP2-like ethylene-responsive transcription factor ANT [Source:UniProtKB/Swiss-Prot;Acc:Q38914]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.