Factsheet for PGSC0003DMT400071732

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g007260.2.1	Tomato	nucleus	92.56	92.97
GSMUA_AchrUn_...	Banana	nucleus	43.98	57.27
PGSC0003DMT400028706	Potato	nucleus	55.14	56.63
KRG89074	Soybean	nucleus	51.86	52.9
GSMUA_Achr8P01980_001	Banana	nucleus	42.45	52.43
GSMUA_Achr10P...	Banana	nucleus	47.92	49.55
KRH22956	Soybean	nucleus	51.2	49.16
KRH24963	Soybean	nucleus	52.95	49.09
GSMUA_Achr9P03060_001	Banana	nucleus	46.17	48.73
CDY04573	Canola	nucleus	48.14	48.46
Bra011939.1-P	Field mustard	nucleus	48.14	48.46
GSMUA_Achr11P...	Banana	nucleus	45.3	47.92
CDY15760	Canola	nucleus	47.48	47.8
AT2G28550.3	Thale cress	nucleus	47.7	46.98
GSMUA_Achr5P29290_001	Banana	nucleus	44.2	46.98
KRH10362	Soybean	nucleus	49.67	46.8
CDX95767	Canola	nucleus	42.67	46.76
PGSC0003DMT400065313	Potato	nucleus	50.77	46.49
Bra000487.1-P	Field mustard	nucleus	41.79	45.8
PGSC0003DMT400031401	Potato	nucleus	40.48	45.45
CDX83296	Canola	nucleus	42.67	44.72
GSMUA_Achr6P33140_001	Banana	nucleus	46.61	44.65
GSMUA_Achr8P21030_001	Banana	nucleus	48.14	43.82
GSMUA_Achr5P07270_001	Banana	nucleus	46.39	43.53
GSMUA_Achr6P34420_001	Banana	nucleus	44.86	43.07
PGSC0003DMT400016881	Potato	nucleus	23.63	42.19
GSMUA_Achr9P04270_001	Banana	nucleus	41.79	40.55
PGSC0003DMT400016585	Potato	nucleus	41.79	40.21
PGSC0003DMT400010231	Potato	nucleus	43.54	38.79
PGSC0003DMT400065501	Potato	nucleus	42.45	38.42
PGSC0003DMT400074397	Potato	nucleus	12.91	30.73
PGSC0003DMT400036707	Potato	nucleus	14.88	29.57
PGSC0003DMT400023709	Potato	nucleus	10.72	22.9
PGSC0003DMT400023711	Potato	nucleus	8.32	13.82
PGSC0003DMT400035808	Potato	nucleus, plastid	4.38	13.07
PGSC0003DMT400055211	Potato	nucleus	7.0	8.86

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:M1CP82	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400027904	PGSC:PGSC0003DMG400027904	EnsemblPlants:PGSC0003DMT400071732
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF46	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002964267	SEG:seg	:	:	:	:

Description

Relative to APETALA2 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400027904]

Coordinates

chr9:-:6664957..6668182

Molecular Weight (calculated)

50069.3 Da

IEP (calculated)

7.077

GRAVY (calculated)

-0.533

Length

457 amino acids

Sequence
(BLAST)

001: METVTASGKL KELSFGQIEN SGTSNSSIVN VETSSTAGDD EFISCSDQRT DGYAFEILRA DYEGNGFVTK ELFPLTGGES AAPPSQQQQW LDLSGNYSDV
101: PMEQRIVLGP PQLRQQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGLD ADINFNVSDY HDDLKQMGNF
201: SKEEFVHVLR RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSEIEAAR AYDKAAIKCN GREAVTNFEL STYEGELSTE ADNGGADHNL
301: DLNLGIAPSV FADDQGGNTC QMGNYVVQCV SNGLPGYGGA MNIPTTTMGG KLLHGHQLLT DRPLLWNGVN TSIFPTLKGT ALGKGIEVDS SPNWTRQDQH
401: PYGGSPSVPL FSTAASSGFA NTTTAAAQLP CFSNGKLPYQ HSPSLANMNF AHYYCRS

Best Arabidopsis Sequence Match ( AT2G28550.3 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE AARAYDKAAI NTNGREAVTN
301: FEMSSYQNEI NSESNNSEID LNLGISLSTG NAPKQNGRLF HFPSNTYETQ RGVSLRIDNE YMGKPVNTPL PYGSSDHRLY WNGACPSYNN PAEGRATEKR
401: SEAEGMMSNW GWQRPGQTSA VRPQPPGPQP PPLFSVAAAS SGFSHFRPQP PNDNATRGYF YPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.