Factsheet for PGSC0003DMT400035808

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0658000-00	Rice	endoplasmic reticulum, extracellular	39.87	33.33
PGSC0003DMT400023711	Potato	nucleus	32.03	17.82
PGSC0003DMT400055211	Potato	nucleus	40.52	17.17
Zm00001d013170_P001	Maize	nucleus	32.68	10.46
PGSC0003DMT400031401	Potato	nucleus	15.69	5.9
PGSC0003DMT400028706	Potato	nucleus	14.38	4.94
PGSC0003DMT400016585	Potato	nucleus	15.03	4.84
PGSC0003DMT400065313	Potato	nucleus	15.69	4.81
PGSC0003DMT400010231	Potato	nucleus	15.03	4.48
PGSC0003DMT400071732	Potato	nucleus	13.07	4.38
PGSC0003DMT400065501	Potato	nucleus	14.38	4.36
PGSC0003DMT400023709	Potato	nucleus	3.92	2.8
CDY71682	Canola	nucleus	1.96	1.45
HORVU2Hr1G063070.1	Barley	nucleus	0.65	1.02
VIT_04s0023g00970.t01	Wine grape	nucleus	0.65	0.85
PGSC0003DMT400016881	Potato	nucleus	0.0	0.0
PGSC0003DMT400036707	Potato	nucleus	0.0	0.0
KXG24410	Sorghum	mitochondrion	0.0	0.0
PGSC0003DMT400074397	Potato	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400035808	EnsemblPlantsGene:PGSC0003DMG402013782	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:AP2-like_transcript_factor
PANTHER:PTHR32467	PANTHER:PTHR32467:SF72	PGSC:PGSC0003DMG402013782	SEG:seg	UniParc:UPI000296FC88	UniProt:M1B2U9
MapMan:35.1	:	:	:	:	:

Description

AP2 domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG402013782]

Coordinates

chr7:-:12417499..12418436

Molecular Weight (calculated)

17403.2 Da

IEP (calculated)

9.274

GRAVY (calculated)

-0.918

Length

153 amino acids

Sequence
(BLAST)

001: MDMNSSCEKW LGFSLSNINN LPPSTTNSSQ LSIFQAFNSN PNSWDVRQNE NGAPKLENLL GSSYCESNTT TSCEYGSELK RIAATFLPTF TDDHKDKLPL
101: IVTQPKKPHE SFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RRQGQSRKGR QGI

Best Arabidopsis Sequence Match ( AT5G57390.1 )
(BLAST)

001: MKNNNNKSSS SSSYDSSLSP SSSSSSHQNW LSFSLSNNNN NFNSSSNPNL TSSTSDHHHP HPSHLSLFQA FSTSPVERQD GSPGVSPSDA TAVLSVYPGG
101: PKLENFLGGG ASTTTTRPMQ QVQSLGGVVF SSDLQPPLHP PSAAEIYDSE LKSIAASFLG NYSGGHSSEV SSVHKQQPNP LAVSEASPTP KKNVESFGQR
201: TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEDKAAR AYDLAALKYW GPTTTTNFPI SNYESELEEM KHMTRQEFVA SLRRKSSGFS
301: RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDISRYDVK SIASCNLPVG GLMPKPSPAT AAADKTVDLS
401: PSDSPSLTTP SLTFNVATPV NDHGGTFYHT GIPIKPDPAD HYWSNIFGFQ ANPKAEMRPL ANFGSDLHNP SPGYAIMPVM QEGENNFGGS FVGSDGYNNH
501: SAASNPVSAI PLSSTTTMSN GNEGYGGNIN WINNNISSSY QTAKSNLSVL HTPVFGLE

Arabidopsis Description

AIL5AP2-like ethylene-responsive transcription factor AIL5 [Source:UniProtKB/Swiss-Prot;Acc:Q6PQQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.