Factsheet for VIT_04s0023g00970.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24410	Sorghum	mitochondrion	37.61	53.66
HORVU2Hr1G063070.1	Barley	nucleus	29.06	34.69
PGSC0003DMT400023709	Potato	nucleus	42.73	23.36
CDY71682	Canola	nucleus	37.61	21.26
Zm00001d014670_P001	Maize	endoplasmic reticulum, golgi	32.48	20.32
Solyc03g123430.2.1	Tomato	nucleus	42.73	9.75
VIT_06s0004g03590.t01	Wine grape	nucleus	37.61	8.8
VIT_08s0040g03180.t01	Wine grape	nucleus	36.75	8.69
VIT_13s0019g03550.t01	Wine grape	nucleus	36.75	8.65
VIT_07s0031g00220.t01	Wine grape	nucleus	36.75	8.48
VIT_08s0007g08580.t01	Wine grape	nucleus	24.79	6.81
Os06t0658000-00	Rice	endoplasmic reticulum, extracellular	1.71	1.09
PGSC0003DMT400035808	Potato	nucleus, plastid	0.85	0.65
PGSC0003DMT400023711	Potato	nucleus	0.85	0.36
PGSC0003DMT400055211	Potato	nucleus	0.85	0.28

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ProteinID:CCB44496	ProteinID:CCB44496.1	InterPro:DNA-bd_dom_sf	UniProt:F6GX10	EMBL:FN594959	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PIRSF:PIRSF038123	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF47	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI000210A02C	ArrayExpress:VIT_04s0023g00970	EnsemblPlantsGene:VIT_04s0023g00970	EnsemblPlants:VIT_04s0023g00970.t01	RefSeq:XP_003631862
RefSeq:XP_003631862.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4:+:17388144..17390691

Molecular Weight (calculated)

13324.7 Da

IEP (calculated)

6.944

GRAVY (calculated)

-0.441

Length

117 amino acids

Sequence
(BLAST)

001: MRLIYGTTVA EEDKLEREGK EWKSSGFSRG VSIYRGVIRH HQHGRWQARI GRVAGNKDLD LGTFSTQEEA AEVYDIAAIK FQHLNAVTNF DMSRYDVNSI
101: LESSTLPIFS CEVVQRC

Best Arabidopsis Sequence Match ( AT3G20840.1 )
(BLAST)

001: MNSNNWLGFP LSPNNSSLPP HEYNLGLVSD HMDNPFQTQE WNMINPHGGG GDEGGEVPKV ADFLGVSKPD ENQSNHLVAY NDSDYYFHTN SLMPSVQSND
101: VVVAACDSNT PNNSSYHELQ ESAHNLQSLT LSMGTTAGNN VVDKASPSET TGDNASGGAL AVVETATPRR ALDTFGQRTS IYRGVTRHRW TGRYEAHLWD
201: NSCRREGQSR KGRQVYLGGY DKEDKAARSY DLAALKYWGP STTTNFPITN YEKEVEEMKH MTRQEFVAAI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI
301: GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EINRYDVKAI LESSTLPIGG GAAKRLKEAQ ALESSRKREA EMIALGSSFQ YGGGSSTGSG
401: STSSRLQLQP YPLSIQQPLE PFLSLQNNDI SHYNNNNAHD SSSFNHHSYI QTQLHLHQQT NNYLQQQSSQ NSQQLYNAYL HSNPALLHGL VSTSIVDNNN
501: NNGGSSGSYN TAAFLGNHGI GIGSSSTVGS TEEFPTVKTD YDMPSSDGTG GYSGWTSESV QGSNPGGVFT MWNE

Arabidopsis Description

PLT1AP2-like ethylene-responsive transcription factor PLT1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.