CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70384	Soybean	nucleus	88.38	87.74
Solyc04g049800.2.1	Tomato	nucleus	38.01	39.45
PGSC0003DMT400031401	Potato	nucleus	37.77	38.33
VIT_13s0019g03550.t01	Wine grape	nucleus	43.1	35.81
KRG89074	Soybean	nucleus	38.5	35.49
Zm00001d010987_P001	Maize	nucleus	32.93	35.23
CDY09223	Canola	nucleus	35.11	33.64
Bra020262.1-P	Field mustard	nucleus	34.87	33.57
KRH22956	Soybean	nucleus	38.5	33.4
KRH67634	Soybean	nucleus	36.32	32.68
KRH24963	Soybean	nucleus	38.5	32.25
KRH10362	Soybean	nucleus	37.77	32.16
OQU77289	Sorghum	nucleus	33.41	31.58
Os05t0121600-01	Rice	nucleus	38.98	31.45
Bra002510.1-P	Field mustard	nucleus	34.38	31.42
KRG95917	Soybean	mitochondrion	37.53	31.38
Zm00001d035512_P001	Maize	nucleus	38.74	31.31
TraesCS1A01G058400.1	Wheat	nucleus	38.5	31.18
TraesCS1D01G059200.1	Wheat	nucleus	38.5	31.12
CDY31576	Canola	nucleus	33.9	30.97
HORVU1Hr1G011800.4	Barley	nucleus	38.26	30.74
TraesCS1B01G076300.1	Wheat	nucleus	38.01	30.66
CDX80199	Canola	nucleus	33.66	30.62
KRH77030	Soybean	nucleus	36.32	29.88
AT5G60120.2	Thale cress	nucleus	34.87	28.4
KRH04560	Soybean	nucleus	35.59	27.63
KRH57898	Soybean	nucleus	35.35	27.39
KRH28441	Soybean	nucleus	32.45	27.02
KRG95240	Soybean	nucleus	18.4	18.18
KRH66909	Soybean	nucleus	18.4	17.97
KRH72011	Soybean	nucleus	17.43	16.11

Protein Annotations

EntrezGene:100783626	MapMan:15.5.7.3	Gene3D:3.30.730.10	EMBL:ACUP02006471	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_10G116600	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K7LIT0	EnsemblPlants:KRH33335
ProteinID:KRH33335	ProteinID:KRH33335.1	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF70
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000233C60E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:29253954..29258823

Molecular Weight (calculated)

45541.6 Da

IEP (calculated)

9.196

GRAVY (calculated)

-0.581

Length

413 amino acids

Sequence
(BLAST)

001: MAMFDLNVDI NHGDADADSS CDQKGLQLQS FPPEISASRT ANSSVWNPAE DDSSNNSSPL IFDILKKERD KSEFDAATER VNKEAEIVTR TLFPVTAAAA
101: ADNGARVPDF KLGLWGKTQC LNLCLPEPDG QNGLRTLQQK LPHVRKNRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAQ AAARAYDRAA
201: IKFRGVEADI NFSLSDYEED LKQMRGLSKE EFVLLLRRQI NGSSRSSTYK GALALRKDAQ GEPRRAPFIG KTFYPNSSIK CDDGKVDASF KPCSYKGEII
301: ANSSMAGTSH NLDLSLGISP SSKRLKNDYS GGYSFGCMAS LACKIPKERG TMEKAMVDRI RNVPLQKISN LAWQLCSNGS SIVPRPLQPN AASSGFVSSS
401: SCLITDTSNQ HKY

Best Arabidopsis Sequence Match ( AT2G28550.1 )
(BLAST)

001: MLDLNLNADS PESTQYGGDS YLDRQTSDNS AGNRVEESGT STSSVINADG DEDSCSTRAF TLSFDILKVG SSSGGDESPA ASASVTKEFF PVSGDCGHLR
101: DVEGSSSSRN WIDLSFDRIG DGETKLVTPV PTPAPVPAQV KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR
201: GVDADINFTL GDYEEDMKQV QNLSKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DKAAINTNGR EAVTNFEMSS YQNEINSESN
301: NSEIDLNLGI SLSTGNAPKQ NGRLFHFPSN TYETQRGVSL RIDNEYMGKP VNTPLPYGSS DHRLYWNGAC PSYNNPAEGR ATEKRSEAEG MMSNWGWQRP
401: GQTSAVRPQP PGPQPPPLFS VAAASSGFSH FRPQPPNDNA TRGYFYPHP

Arabidopsis Description

RAP2.7Related to AP2.7 [Source:UniProtKB/TrEMBL;Acc:F4IIR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.