Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra004641.1-P | Field mustard | nucleus | 92.71 | 95.17 |
CDX79921 | Canola | nucleus | 91.29 | 90.02 |
CDY35402 | Canola | nucleus | 83.53 | 86.37 |
CDY22537 | Canola | nucleus | 85.88 | 85.28 |
AT2G41710.4 | Thale cress | nucleus | 84.0 | 77.78 |
VIT_08s0007g08580.t01 | Wine grape | nucleus | 66.59 | 66.43 |
KRG95240 | Soybean | nucleus | 63.06 | 64.11 |
KRH66909 | Soybean | nucleus | 63.06 | 63.36 |
Solyc02g030210.2.1 | Tomato | nucleus | 49.41 | 59.83 |
KRH72011 | Soybean | nucleus | 57.65 | 54.81 |
GSMUA_AchrUn_... | Banana | nucleus | 42.59 | 52.62 |
Os05t0389000-02 | Rice | nucleus | 47.53 | 47.53 |
EES19464 | Sorghum | nucleus | 46.35 | 47.36 |
TraesCS1D01G242800.1 | Wheat | nucleus | 46.35 | 46.68 |
TraesCS1B01G254300.1 | Wheat | nucleus | 46.35 | 46.68 |
TraesCS1A01G242800.1 | Wheat | nucleus | 45.88 | 46.65 |
HORVU1Hr1G056500.15 | Barley | nucleus, plastid | 46.12 | 43.56 |
Zm00001d038087_P003 | Maize | mitochondrion | 34.35 | 30.23 |
CDY71682 | Canola | nucleus | 12.94 | 26.57 |
CDX73419 | Canola | nucleus | 18.82 | 23.26 |
CDY68119 | Canola | nucleus | 18.59 | 23.03 |
CDY07510 | Canola | nucleus | 17.18 | 22.26 |
CDX69282 | Canola | nucleus | 20.94 | 22.25 |
CDY01432 | Canola | nucleus | 18.59 | 21.94 |
CDY12814 | Canola | nucleus | 18.59 | 21.88 |
CDX83296 | Canola | nucleus | 22.12 | 21.56 |
CDY62228 | Canola | nucleus | 21.41 | 21.11 |
CDX95767 | Canola | nucleus | 20.71 | 21.1 |
CDY29538 | Canola | nucleus | 21.41 | 21.06 |
CDY15760 | Canola | nucleus | 22.35 | 20.93 |
CDY04573 | Canola | nucleus | 22.12 | 20.7 |
PGSC0003DMT400074397 | Potato | nucleus | 9.18 | 20.31 |
CDY09223 | Canola | nucleus | 20.47 | 20.19 |
CDY31576 | Canola | nucleus | 20.94 | 19.69 |
CDX80199 | Canola | nucleus | 20.71 | 19.38 |
PGSC0003DMT400036707 | Potato | nucleus | 9.65 | 17.83 |
CDY71179 | Canola | nucleus | 8.94 | 16.74 |
CDY71282 | Canola | nucleus | 8.94 | 16.31 |
CDY19560 | Canola | nucleus | 1.65 | 6.8 |
Protein Annotations
MapMan:15.5.7.3 | Gene3D:3.30.730.10 | GO:A0A078GGR8 | UniProt:A0A078GGR8 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom |
InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY23833 | ProteinID:CDY23833 | ProteinID:CDY23833.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
EnsemblPlantsGene:GSBRNA2T00024248001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR32467 |
PANTHER:PTHR32467:SF32 | SMART:SM00380 | SUPFAM:SSF54171 | TMHMM:TMhelix | UniParc:UPI0004EE5360 | SEG:seg |
Description
BnaC04g02040DBnaC04g02040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGR8]
Coordinates
chrLK032150:+:55131..57783
Molecular Weight (calculated)
47354.8 Da
IEP (calculated)
9.106
GRAVY (calculated)
-0.682
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSDQGPKT EAGGGGESSE TVAASDEMLL YRGFKKAKKE RGCTAKERIS KMPPCTAGKR SSIYRGVTRF RKLSLRFLII IAIGGMLMHR WTGRYEAHLW
101: DKTTWNQNQN KKGKQVYLGA YDDEEAAARA YDLAALKYWG PGTLINFPVT DYSRDLEEMQ NLSREEYLAS LRRKSSGFSR GIAKYRGLQS RWDASASRMP
201: GPDYFSNVHY GDERGTEGDF LGNFCLERKI DLTGYIKWWG VNKPRQPESS SSKASEDAKI EDAGTELKTL EHTSHATEPF KAPNLGVLQR KEKQISSSAL
301: SILSASPAYK SLEEKVLKIQ ESSSSVREND ENVNRNIINM EKSHGKEIEK PAVSLGSGSA FSLQKSMYPL TSLLTSPLLT NYNTLDPLGD PILWTQFLPP
401: GSSHTSEVTK TETSCSTYSC LPQEK
101: DKTTWNQNQN KKGKQVYLGA YDDEEAAARA YDLAALKYWG PGTLINFPVT DYSRDLEEMQ NLSREEYLAS LRRKSSGFSR GIAKYRGLQS RWDASASRMP
201: GPDYFSNVHY GDERGTEGDF LGNFCLERKI DLTGYIKWWG VNKPRQPESS SSKASEDAKI EDAGTELKTL EHTSHATEPF KAPNLGVLQR KEKQISSSAL
301: SILSASPAYK SLEEKVLKIQ ESSSSVREND ENVNRNIINM EKSHGKEIEK PAVSLGSGSA FSLQKSMYPL TSLLTSPLLT NYNTLDPLGD PILWTQFLPP
401: GSSHTSEVTK TETSCSTYSC LPQEK
001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRFGCE LGVVLSVLEY GMFGLVDMHF
101: VSRLKLEEMS RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK YWGPGTLINF PVTDYTRDLE EMQNLSREEY LASLRRKSSG
201: FSRGIAKYRG LQSRWDASAS RMPGPEYFSN IHYGAGDDRG TEGDFLGSFC LERKIDLTGY IKWWGANKNR QPESSSKASE DANVEDAGTE LKTLEHTSHA
301: TEPYKAPNLG VLCGTQRKEK EISSPSSSSA LSILSQSPAF KSLEEKVLKI QESCNNENDE NANRNIINME KNNGKAIEKP VVSHGVALGG AAALSLQKSM
401: YPLTSLLTAP LLTNYNTLDP LADPILWTPF LPSGSSLTSE VTKTETSCST YSYLPQEK
101: VSRLKLEEMS RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK YWGPGTLINF PVTDYTRDLE EMQNLSREEY LASLRRKSSG
201: FSRGIAKYRG LQSRWDASAS RMPGPEYFSN IHYGAGDDRG TEGDFLGSFC LERKIDLTGY IKWWGANKNR QPESSSKASE DANVEDAGTE LKTLEHTSHA
301: TEPYKAPNLG VLCGTQRKEK EISSPSSSSA LSILSQSPAF KSLEEKVLKI QESCNNENDE NANRNIINME KNNGKAIEKP VVSHGVALGG AAALSLQKSM
401: YPLTSLLTAP LLTNYNTLDP LADPILWTPF LPSGSSLTSE VTKTETSCST YSYLPQEK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.