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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra004641.1-P Field mustard nucleus 92.71 95.17
CDX79921 Canola nucleus 91.29 90.02
CDY35402 Canola nucleus 83.53 86.37
CDY22537 Canola nucleus 85.88 85.28
AT2G41710.4 Thale cress nucleus 84.0 77.78
VIT_08s0007g08580.t01 Wine grape nucleus 66.59 66.43
KRG95240 Soybean nucleus 63.06 64.11
KRH66909 Soybean nucleus 63.06 63.36
Solyc02g030210.2.1 Tomato nucleus 49.41 59.83
KRH72011 Soybean nucleus 57.65 54.81
GSMUA_AchrUn_... Banana nucleus 42.59 52.62
Os05t0389000-02 Rice nucleus 47.53 47.53
EES19464 Sorghum nucleus 46.35 47.36
TraesCS1D01G242800.1 Wheat nucleus 46.35 46.68
TraesCS1B01G254300.1 Wheat nucleus 46.35 46.68
TraesCS1A01G242800.1 Wheat nucleus 45.88 46.65
HORVU1Hr1G056500.15 Barley nucleus, plastid 46.12 43.56
Zm00001d038087_P003 Maize mitochondrion 34.35 30.23
CDY71682 Canola nucleus 12.94 26.57
CDX73419 Canola nucleus 18.82 23.26
CDY68119 Canola nucleus 18.59 23.03
CDY07510 Canola nucleus 17.18 22.26
CDX69282 Canola nucleus 20.94 22.25
CDY01432 Canola nucleus 18.59 21.94
CDY12814 Canola nucleus 18.59 21.88
CDX83296 Canola nucleus 22.12 21.56
CDY62228 Canola nucleus 21.41 21.11
CDX95767 Canola nucleus 20.71 21.1
CDY29538 Canola nucleus 21.41 21.06
CDY15760 Canola nucleus 22.35 20.93
CDY04573 Canola nucleus 22.12 20.7
PGSC0003DMT400074397 Potato nucleus 9.18 20.31
CDY09223 Canola nucleus 20.47 20.19
CDY31576 Canola nucleus 20.94 19.69
CDX80199 Canola nucleus 20.71 19.38
PGSC0003DMT400036707 Potato nucleus 9.65 17.83
CDY71179 Canola nucleus 8.94 16.74
CDY71282 Canola nucleus 8.94 16.31
CDY19560 Canola nucleus 1.65 6.8
Protein Annotations
MapMan:15.5.7.3Gene3D:3.30.730.10GO:A0A078GGR8UniProt:A0A078GGR8InterPro:AP2-like_transcript_factorInterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sfEnsemblPlants:CDY23833ProteinID:CDY23833ProteinID:CDY23833.1InterPro:DNA-bd_dom_sfGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016021
EnsemblPlantsGene:GSBRNA2T00024248001InterPro:IPR001471InterPro:IPR036955PFAM:PF00847PFscan:PS51032PANTHER:PTHR32467
PANTHER:PTHR32467:SF32SMART:SM00380SUPFAM:SSF54171TMHMM:TMhelixUniParc:UPI0004EE5360SEG:seg
Description
BnaC04g02040DBnaC04g02040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGR8]
Coordinates
chrLK032150:+:55131..57783
Molecular Weight (calculated)
47354.8 Da
IEP (calculated)
9.106
GRAVY (calculated)
-0.682
Length
425 amino acids
Sequence
(BLAST)
001: MASSDQGPKT EAGGGGESSE TVAASDEMLL YRGFKKAKKE RGCTAKERIS KMPPCTAGKR SSIYRGVTRF RKLSLRFLII IAIGGMLMHR WTGRYEAHLW
101: DKTTWNQNQN KKGKQVYLGA YDDEEAAARA YDLAALKYWG PGTLINFPVT DYSRDLEEMQ NLSREEYLAS LRRKSSGFSR GIAKYRGLQS RWDASASRMP
201: GPDYFSNVHY GDERGTEGDF LGNFCLERKI DLTGYIKWWG VNKPRQPESS SSKASEDAKI EDAGTELKTL EHTSHATEPF KAPNLGVLQR KEKQISSSAL
301: SILSASPAYK SLEEKVLKIQ ESSSSVREND ENVNRNIINM EKSHGKEIEK PAVSLGSGSA FSLQKSMYPL TSLLTSPLLT NYNTLDPLGD PILWTQFLPP
401: GSSHTSEVTK TETSCSTYSC LPQEK
Best Arabidopsis Sequence Match ( AT2G41710.3 )
(BLAST)
001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRFGCE LGVVLSVLEY GMFGLVDMHF
101: VSRLKLEEMS RHRWTGRYEA HLWDKSTWNQ NQNKKGKQVY LGAYDDEEAA ARAYDLAALK YWGPGTLINF PVTDYTRDLE EMQNLSREEY LASLRRKSSG
201: FSRGIAKYRG LQSRWDASAS RMPGPEYFSN IHYGAGDDRG TEGDFLGSFC LERKIDLTGY IKWWGANKNR QPESSSKASE DANVEDAGTE LKTLEHTSHA
301: TEPYKAPNLG VLCGTQRKEK EISSPSSSSA LSILSQSPAF KSLEEKVLKI QESCNNENDE NANRNIINME KNNGKAIEKP VVSHGVALGG AAALSLQKSM
401: YPLTSLLTAP LLTNYNTLDP LADPILWTPF LPSGSSLTSE VTKTETSCST YSYLPQEK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.