Factsheet for Bra004641.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23833	Canola	nucleus	95.17	92.71
CDX79921	Canola	nucleus	96.38	92.58
Bra000237.1-P	Field mustard	nucleus	91.55	81.86
AT2G41710.4	Thale cress	nucleus	88.65	79.96
VIT_08s0007g08580.t01	Wine grape	nucleus	69.81	67.84
KRG95240	Soybean	nucleus	66.43	65.79
KRH66909	Soybean	nucleus	66.43	65.01
Solyc02g030210.2.1	Tomato	nucleus	51.69	60.97
KRH72011	Soybean	nucleus	60.39	55.93
GSMUA_AchrUn_...	Banana	nucleus	44.69	53.78
Os05t0389000-02	Rice	nucleus	49.52	48.24
EES19464	Sorghum	nucleus	48.31	48.08
TraesCS1D01G242800.1	Wheat	nucleus	48.31	47.39
TraesCS1B01G254300.1	Wheat	nucleus	48.31	47.39
TraesCS1A01G242800.1	Wheat	nucleus	47.83	47.37
HORVU1Hr1G056500.15	Barley	nucleus, plastid	47.83	44.0
Zm00001d038087_P003	Maize	mitochondrion	35.99	30.85
Bra007123.1-P	Field mustard	nucleus	19.08	23.03
Bra012139.1-P	Field mustard	nucleus	18.84	21.67
Bra000487.1-P	Field mustard	nucleus	21.5	21.34
Bra017809.1-P	Field mustard	nucleus	22.22	21.3
Bra011741.1-P	Field mustard	nucleus	22.22	21.25
Bra011939.1-P	Field mustard	nucleus	23.19	21.15
PGSC0003DMT400074397	Potato	nucleus	9.66	20.83
Bra020262.1-P	Field mustard	nucleus	21.01	20.28
Bra002510.1-P	Field mustard	nucleus	21.5	19.69
PGSC0003DMT400036707	Potato	nucleus	10.14	18.26

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra004641
EnsemblPlants:Bra004641.1	EnsemblPlants:Bra004641.1-P	ncoils:Coil	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CKA6
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF32	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0002547791	SEG:seg	:	:	:

Description

AT2G41710 (E=5e-164) | ovule development protein, putative

Coordinates

chrA05:-:1185338..1187593

Molecular Weight (calculated)

45803.5 Da

IEP (calculated)

8.709

GRAVY (calculated)

-0.774

Length

414 amino acids

Sequence
(BLAST)

001: MASSDQGPKT EAGGGGESSE TVAAASDEML LYRGFKKAKK ERGCTAKERI SKMPPCTAGK RSSIYRGVTR HRWTGRYEAH LWDKTTWNQN QNKKGKQVYL
101: GAYDDEEAAA RAYDLAALKY WGPGTLINFP VTDYSRDLEE MQNLSREEYL ASLRRKSSGF SRGIAKYRGL QSRWDASASR MPGPEYFSNM HYGAGDERGT
201: EGDFLGNFCL ERKIDLTGYI KWWGVNKPRQ PESSSSKASE DAKVEDAGTE LKTLEHTSHA TEPYKAPNLG VLQRKEKQIS SSALSILSAS PAYKSLEEKV
301: LKIQESSSSA RENDENANRN IINMEKSHGK EIEKPVVSLG SGGVVPSGAL SLQKSMYPLT SLLTSPLLTN YNTLDPLGDP ILWTPFLPPG SSHTSEVTKT
401: ETSCSTYSYL PQEK

Best Arabidopsis Sequence Match ( AT2G41710.1 )
(BLAST)

001: MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK
101: GKQVYLGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RKSSGFSRGI AKYRGLQSRW DASASRMPGP EYFSNIHYGA
201: GDDRGTEGDF LGSFCLERKI DLTGYIKWWG ANKNRQPESS SKASEDANVE DAGTELKTLE HTSHATEPYK APNLGVLCGT QRKEKEISSP SSSSALSILS
301: QSPAFKSLEE KVLKIQESCN NENDENANRN IINMEKNNGK AIEKPVVSHG VALGGAAALS LQKSMYPLTS LLTAPLLTNY NTLDPLADPI LWTPFLPSGS
401: SLTSEVTKTE TSCSTYSYLP QEK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT2G41710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.