Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | endoplasmic reticulum | 15.42 | 45.59 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 11.94 | 35.29 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 20.9 | 22.46 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 21.89 | 19.56 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 13.43 | 18.37 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum | 1.99 | 10.26 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 2.99 | 5.04 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | ProteinID:CCB59080 | ProteinID:CCB59080.1 | UniProt:F6HWL6 | EMBL:FN596273 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0022625 | PFAM:PF17135 | PANTHER:PTHR10934 | PANTHER:PTHR10934:SF9 | InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P |
| UniParc:UPI000210A488 | ArrayExpress:VIT_00s0283g00090 | EnsemblPlantsGene:VIT_00s0283g00090 | EnsemblPlants:VIT_00s0283g00090.t01 | SEG:seg | : |
Description
No Description!
Coordinates
chrUn:+:21255653..21257093
Molecular Weight (calculated)
22196.5 Da
IEP (calculated)
9.265
GRAVY (calculated)
-0.423
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTLRYVYCG FFVRLDYHIE KAGGECLTFD QLALKISLGQ NADLLRGPNN AHETIEHLSK ALGVPYSHPC SRIPSQPSYS SHTTYMQLKV SLTPHPFSRT
101: PSRPSHNSHT AHIQLKVSLT PYHAAAPNHM LTHTSPPCSC IPPSTHPWPS HTIIQPHARP HGPPCNHTSS QLTHIVHTTH HATVPASHAL TKPTQLTKLP
201: L
101: PSRPSHNSHT AHIQLKVSLT PYHAAAPNHM LTHTSPPCSC IPPSTHPWPS HTIIQPHARP HGPPCNHTSS QLTHIVHTTH HATVPASHAL TKPTQLTKLP
201: L
001: MSKVNKAPLS LSRLVEFMTG KEDKIAVLVG TITDDLRVHE IPAMKVTALR FTERARARIE KAGGECLTFD QLALRAPLGQ NTVLLRGPKN SREAVKHFGP
101: APGVPHSHSK PYVRAKGRKF EKARGKRKSR GFKV
101: APGVPHSHSK PYVRAKGRKF EKARGKRKSR GFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.