Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 4
- endoplasmic reticulum 3
- mitochondrion 1
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 67.65 | 50.55 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 67.65 | 34.33 |
| GSMUA_Achr11P... | Banana | cytosol | 66.18 | 33.58 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 67.65 | 22.89 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 67.65 | 18.55 |
| VIT_00s0283g00090.t01 | Wine grape | nucleus | 45.59 | 15.42 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr11G05470_001 | EnsemblPlants:GSMUA_Achr11P05470_001 |
| EnsemblPlants:GSMUA_Achr11T05470_001 | UniProt:M0RPM7 | PFAM:PF17135 | PANTHER:PTHR10934 | PANTHER:PTHR10934:SF3 | InterPro:Ribosomal_L18e |
| InterPro:Ribosomal_L18e/L15P | UniParc:UPI000294CE31 | : | : | : | : |
Description
60S ribosomal protein L18-2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G05470_001]
Coordinates
chr11:-:4068915..4071412
Molecular Weight (calculated)
7577.3 Da
IEP (calculated)
10.562
GRAVY (calculated)
-0.103
Length
68 amino acids
Sequence
(BLAST)
(BLAST)
1: MERTIRLLIA VAGGECLTFD QLALRAPIGQ NTFNVIYRYS LLRGPKNARE ALKHFGKAPG VPQDFGFK
001: MSKVNKAPLS LSRLVEFMTG KEDKIAVLVG TITDDLRVHE IPAMKVTALR FTERARARIE KAGGECLTFD QLALRAPLGQ NTVLLRGPKN SREAVKHFGP
101: APGVPHSHSK PYVRAKGRKF EKARGKRKSR GFKV
101: APGVPHSHSK PYVRAKGRKF EKARGKRKSR GFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.