Factsheet for GSMUA_Achr2P01730_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT5G27850.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT5G27850.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT5G27850.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	44.78	98.9
GSMUA_Achr5P27080_001	Banana	cytosol	64.18	96.27
GSMUA_Achr11P...	Banana	cytosol	62.69	94.03
OQU92626	Sorghum	cytosol	82.09	88.24
EES17748	Sorghum	cytosol	82.09	87.77
Zm00001d009848_P001	Maize	cytosol	81.09	87.17
EER97722	Sorghum	cytosol	81.09	87.17
VIT_14s0060g01930.t01	Wine grape	cytosol	81.09	87.17
Zm00001d022462_P001	Maize	plastid	80.6	86.63
Os05t0155100-01	Rice	nucleus	80.6	86.17
TraesCS2D01G110100.1	Wheat	golgi, unclear	80.1	86.1
TraesCS2A01G109900.1	Wheat	plastid	80.1	86.1
TraesCS4D01G169400.1	Wheat	cytosol, unclear	80.1	86.1
TraesCS2B01G127900.1	Wheat	cytosol	80.1	86.1
Os03t0341100-01	Rice	nucleus	79.6	85.56
TraesCS4B01G166800.1	Wheat	cytosol	79.6	85.56
HORVU2Hr1G018820.1	Barley	cytosol	79.6	85.56
KRH33871	Soybean	nucleus	79.1	85.03
KRG96455	Soybean	nucleus	79.1	85.03
KRH68205	Soybean	nucleus	78.61	84.49
KRH68491	Soybean	nucleus	78.61	84.49
KRG92914	Soybean	nucleus	78.11	83.96
PGSC0003DMT400081310	Potato	nucleus	78.11	83.96
Solyc09g075290.2.1	Tomato	nucleus	77.11	82.89
Os07t0674700-01	Rice	plasma membrane	80.1	82.56
TraesCS1D01G105500.2	Wheat	golgi	77.11	82.45
TraesCS1B01G127200.1	Wheat	cytosol	76.62	82.35
TraesCS1A01G096500.2	Wheat	cytosol	76.62	82.35
AT5G27850.1	Thale cress	nucleus	76.62	82.35
Bra001156.1-P	Field mustard	nucleus	76.62	82.35
Bra036611.1-P	Field mustard	cytosol	76.62	82.35
AT3G05590.1	Thale cress	nucleus	76.12	81.82
CDY36892	Canola	cytosol	24.38	81.67
CDY05185	Canola	cytosol	24.38	81.67
Bra009940.1-P	Field mustard	cytosol	75.62	81.28
VIT_05s0077g02060.t01	Wine grape	mitochondrion	27.36	80.88
PGSC0003DMT400063593	Potato	cytosol	75.12	80.75
Solyc01g099900.2.1	Tomato	nucleus	74.63	80.21
VIT_05s0077g02070.t01	Wine grape	cytosol	58.21	79.59
CDY25018	Canola	cytosol	76.12	77.67
AT2G47570.1	Thale cress	cytosol, nucleus	71.14	76.88
CDY66803	Canola	cytosol	76.12	76.5
CDX99969	Canola	cytosol, plastid	77.11	73.81
CDX74138	Canola	extracellular	77.11	72.77
GSMUA_Achr8P10280_001	Banana	cytosol	89.55	72.58
CDY19736	Canola	cytosol	77.11	72.09
VIT_07s0005g00690.t01	Wine grape	plastid	80.6	72.0
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	77.11	71.43
Zm00001d037603_P002	Maize	cytosol	81.09	70.87
KRG96775	Soybean	mitochondrion, nucleus	79.1	70.35
HORVU2Hr1G018840.4	Barley	cytosol	31.34	69.23
GSMUA_Achr11P...	Banana	endoplasmic reticulum	13.43	69.23
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.11	68.28
GSMUA_Achr11P...	Banana	endoplasmic reticulum	22.89	67.65
CDY05183	Canola	mitochondrion	74.63	67.26
CDX80616	Canola	cytosol	76.62	66.38
CDY18813	Canola	cytosol, mitochondrion	76.62	61.85
Bra040533.1-P	Field mustard	nucleus	76.12	59.07
VIT_14s0036g01220.t01	Wine grape	cytosol	34.83	58.82
Solyc09g025200.1.1	Tomato	extracellular	18.41	51.39
CDY27753	Canola	cytosol, mitochondrion	20.9	35.59
Bra039423.1-P	Field mustard	cytosol	20.9	35.59
CDY46988	Canola	cytosol	14.43	34.94

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr2G01730_001	EnsemblPlants:GSMUA_Achr2P01730_001
EnsemblPlants:GSMUA_Achr2T01730_001	InterPro:L18e/L15P_sf	UniProt:M0S4B4	PFAM:PF17135	ScanProsite:PS01106	PANTHER:PTHR10934
PANTHER:PTHR10934:SF5	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	InterPro:Ribosomal_L18e_CS	SUPFAM:SSF52080	UniParc:UPI000295F894
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L18-2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G01730_001]

Coordinates

chr2:+:7559062..7569634

Molecular Weight (calculated)

22859.3 Da

IEP (calculated)

11.888

GRAVY (calculated)

-0.500

Length

201 amino acids

Sequence
(BLAST)

001: MPAEPRQECF PRVGMGIDLV AGGRSKKARR TAPRSDDVYL KLLVKLYRFL VRRTESKFNA VILKRLFMSK NNRPPISLKR LITFMERKDD KIAVIVGTVT
101: DDKRVYDVPA MKVTALRFTE TARARILKAG GECLTFDQLA LRAPLGQNTV LLRGPKNARE AVKHFGKAPG VPHSHTKPYV RSKGRKFERA RGRRNSRGFR
201: V

Best Arabidopsis Sequence Match ( AT3G05590.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.