Factsheet for Os03t0341100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0171500-01
Os12t0169800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	Os11t0171500-01	AT1G35670.1	19130088
AT5G27850.1	Os12t0169800-00	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92626	Sorghum	cytosol	96.26	96.26
Os07t0674700-01	Rice	plasma membrane	94.65	90.77
Os05t0155100-01	Rice	nucleus	89.84	89.36
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	43.32	89.01
GSMUA_Achr5P27080_001	Banana	cytosol	61.5	85.82
GSMUA_Achr11P...	Banana	cytosol	60.96	85.07
VIT_14s0060g01930.t01	Wine grape	cytosol	85.03	85.03
CDY05185	Canola	cytosol	26.74	83.33
CDY36892	Canola	cytosol	26.74	83.33
AT5G27850.1	Thale cress	nucleus	82.89	82.89
Bra001156.1-P	Field mustard	nucleus	82.89	82.89
KRG96455	Soybean	nucleus	82.89	82.89
AT3G05590.1	Thale cress	nucleus	82.35	82.35
KRH68205	Soybean	nucleus	82.35	82.35
PGSC0003DMT400081310	Potato	nucleus	81.82	81.82
KRH33871	Soybean	nucleus	81.82	81.82
KRG92914	Soybean	nucleus	81.28	81.28
Solyc09g075290.2.1	Tomato	nucleus	80.75	80.75
Bra009940.1-P	Field mustard	cytosol	80.75	80.75
Bra036611.1-P	Field mustard	cytosol	80.75	80.75
KRH68491	Soybean	nucleus	80.75	80.75
GSMUA_Achr2P01730_001	Banana	cytosol	85.56	79.6
PGSC0003DMT400063593	Potato	cytosol	78.61	78.61
Solyc01g099900.2.1	Tomato	nucleus	78.07	78.07
VIT_05s0077g02070.t01	Wine grape	cytosol	60.96	77.55
CDY25018	Canola	cytosol	80.21	76.14
CDY66803	Canola	cytosol	80.75	75.5
AT2G47570.1	Thale cress	cytosol, nucleus	74.33	74.73
VIT_05s0077g02060.t01	Wine grape	mitochondrion	26.74	73.53
CDX74138	Canola	extracellular	82.89	72.77
CDX99969	Canola	cytosol, plastid	80.75	71.9
CDY19736	Canola	cytosol	80.75	70.23
VIT_07s0005g00690.t01	Wine grape	plastid	83.96	69.78
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	82.35	67.84
KRG96775	Soybean	mitochondrion, nucleus	80.75	66.81
CDY05183	Canola	mitochondrion	79.14	66.37
CDX80616	Canola	cytosol	80.75	65.09
GSMUA_Achr8P10280_001	Banana	cytosol	86.1	64.92
CDY18813	Canola	cytosol, mitochondrion	82.89	62.25
VIT_14s0036g01220.t01	Wine grape	cytosol	39.04	61.34
Bra040533.1-P	Field mustard	nucleus	81.28	58.69
Solyc09g025200.1.1	Tomato	extracellular	19.25	50.0
CDY46988	Canola	cytosol	16.58	37.35
Bra039423.1-P	Field mustard	cytosol	22.46	35.59
CDY27753	Canola	cytosol, mitochondrion	22.46	35.59

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	EntrezGene:4332793	ProteinID:ABF95861.1	ProteinID:BAF11983.1	ProteinID:BAS84124.1
ProteinID:EEE59035.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	InterPro:L18e/L15P_sf	EnsemblPlantsGene:Os03g0341100	EnsemblPlants:Os03t0341100-01	PFAM:PF17135
ScanProsite:PS01106	PANTHER:PTHR10934	PANTHER:PTHR10934:SF3	UniProt:Q10LN7	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P
InterPro:Ribosomal_L18e_CS	SUPFAM:SSF52080	UniParc:UPI0000DB4D8D	RefSeq:XP_015631625.1	:	:

Description

Similar to 60S ribosomal protein L18. (Os03t0341100-01)

Coordinates

chr3:-:12715987..12718369

Molecular Weight (calculated)

21075.1 Da

IEP (calculated)

11.971

GRAVY (calculated)

-0.451

Length

187 amino acids

Sequence
(BLAST)

001: MGIDLVAGGR NKKTKRTAPK SDDVYLKLIV KLYRFLVRRT KSPFNAVILR RLFMSKTNRP PLSLRRLVRF MEGKENQIAV IVGTVTDDKR VYEVPAMKVA
101: ALRFTETARA RIVNTGGECL TFDQLALRAP LGQNTVLLRG PKNAREAVKH FGPAPGVPHS NTKPYVRSKG RKFEKARGRR NSKGFKV

Best Arabidopsis Sequence Match ( AT5G27850.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRS NSNFNAVILK RLFMSKVNKA PLSLSRLVEF MTGKDDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18C60S ribosomal protein L18-3 [Source:UniProtKB/Swiss-Prot;Acc:Q940B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.