Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 4
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27753 | Canola | cytosol, mitochondrion | 99.15 | 99.15 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 34.75 | 45.05 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 31.36 | 31.09 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 38.14 | 30.61 |
| Bra001156.1-P | Field mustard | nucleus | 41.53 | 26.2 |
| Bra036611.1-P | Field mustard | cytosol | 38.98 | 24.6 |
| Bra009940.1-P | Field mustard | cytosol | 38.98 | 24.6 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 38.14 | 24.06 |
| PGSC0003DMT400063593 | Potato | cytosol | 38.14 | 24.06 |
| KRH33871 | Soybean | nucleus | 38.14 | 24.06 |
| PGSC0003DMT400081310 | Potato | nucleus | 37.29 | 23.53 |
| KRH68491 | Soybean | nucleus | 37.29 | 23.53 |
| KRH68205 | Soybean | nucleus | 37.29 | 23.53 |
| KRG92914 | Soybean | nucleus | 37.29 | 23.53 |
| Zm00001d022462_P001 | Maize | plastid | 36.44 | 22.99 |
| Zm00001d009848_P001 | Maize | cytosol | 36.44 | 22.99 |
| OQU92626 | Sorghum | cytosol | 36.44 | 22.99 |
| KRG96455 | Soybean | nucleus | 36.44 | 22.99 |
| EER97722 | Sorghum | cytosol | 36.44 | 22.99 |
| EES17748 | Sorghum | cytosol | 36.44 | 22.87 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 35.59 | 22.46 |
| Os03t0341100-01 | Rice | nucleus | 35.59 | 22.46 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 35.59 | 22.46 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 35.59 | 22.46 |
| TraesCS2A01G109900.1 | Wheat | plastid | 35.59 | 22.46 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 35.59 | 22.46 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 35.59 | 22.46 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 35.59 | 22.46 |
| Os05t0155100-01 | Rice | nucleus | 35.59 | 22.34 |
| TraesCS1D01G105500.2 | Wheat | golgi | 35.59 | 22.34 |
| Os07t0674700-01 | Rice | plasma membrane | 36.44 | 22.05 |
| AT2G47570.1 | Thale cress | cytosol, nucleus | 34.75 | 22.04 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 34.75 | 21.93 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 38.98 | 21.2 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 35.59 | 20.9 |
| KRG96775 | Soybean | mitochondrion, nucleus | 39.83 | 20.8 |
| Bra040533.1-P | Field mustard | nucleus | 44.92 | 20.46 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 38.14 | 20.0 |
| Zm00001d037603_P002 | Maize | cytosol | 36.44 | 18.7 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 38.14 | 18.15 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 1.69 | 2.94 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 0.85 | 0.75 |
| GSMUA_Achr11P... | Banana | cytosol | 0.85 | 0.75 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.100.10.10 | MapMan:35.1 | EnsemblPlantsGene:Bra039423 | EnsemblPlants:Bra039423.1 | EnsemblPlants:Bra039423.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | UniProt:M4FEA2 | PFAM:PF17135 | PANTHER:PTHR10934 | PANTHER:PTHR10934:SF9 | InterPro:Ribosomal_L18e |
| InterPro:Ribosomal_L18e/L15P | UniParc:UPI000254739D | SEG:seg | : | : | : |
Description
AT3G05590 (E=1e-020) RPL18 | RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome
Coordinates
chrA05:-:23280761..23281818
Molecular Weight (calculated)
13078.2 Da
IEP (calculated)
10.752
GRAVY (calculated)
-0.049
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MRAALQAAAL LNVTHLRIFS DNQTLIRAIN VKLFEEKKIY GIVKDIEATF LLCYGGGGGT TTSPEKATMG IDLIAGGKSK KTKRTAPKSE DVYLKLTVKL
101: YRFLVRRTQS KFNAVILK
101: YRFLVRRTQS KFNAVILK
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.