Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27850.1 | PGSC0003DMT400002331 | AT1G35670.1 | 19130088 |
| AT5G27850.1 | PGSC0003DMT400067082 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g099900.2.1 | Tomato | nucleus | 99.47 | 99.47 |
| PGSC0003DMT400081310 | Potato | nucleus | 89.3 | 89.3 |
| KRH33871 | Soybean | nucleus | 87.17 | 87.17 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 42.25 | 86.81 |
| KRG92914 | Soybean | nucleus | 86.63 | 86.63 |
| KRH68491 | Soybean | nucleus | 86.1 | 86.1 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 85.56 | 85.56 |
| AT3G05590.1 | Thale cress | nucleus | 82.89 | 82.89 |
| Bra001156.1-P | Field mustard | nucleus | 82.89 | 82.89 |
| AT5G27850.1 | Thale cress | nucleus | 82.35 | 82.35 |
| Bra009940.1-P | Field mustard | cytosol | 82.35 | 82.35 |
| Bra036611.1-P | Field mustard | cytosol | 82.35 | 82.35 |
| CDY05185 | Canola | cytosol | 26.2 | 81.67 |
| CDY36892 | Canola | cytosol | 26.2 | 81.67 |
| OQU92626 | Sorghum | cytosol | 81.28 | 81.28 |
| Zm00001d022462_P001 | Maize | plastid | 81.28 | 81.28 |
| EER97722 | Sorghum | cytosol | 81.28 | 81.28 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 79.68 | 79.68 |
| TraesCS2A01G109900.1 | Wheat | plastid | 79.68 | 79.68 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 79.68 | 79.68 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 79.14 | 79.14 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 79.14 | 79.14 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 56.68 | 79.1 |
| EES17748 | Sorghum | cytosol | 79.14 | 78.72 |
| Os03t0341100-01 | Rice | nucleus | 78.61 | 78.61 |
| GSMUA_Achr11P... | Banana | cytosol | 56.15 | 78.36 |
| Os05t0155100-01 | Rice | nucleus | 78.61 | 78.19 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 78.07 | 78.07 |
| Zm00001d009848_P001 | Maize | cytosol | 78.07 | 78.07 |
| CDY25018 | Canola | cytosol | 81.28 | 77.16 |
| TraesCS1D01G105500.2 | Wheat | golgi | 77.54 | 77.13 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 77.01 | 77.01 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 77.01 | 77.01 |
| CDY66803 | Canola | cytosol | 82.35 | 77.0 |
| AT2G47570.1 | Thale cress | cytosol, nucleus | 75.94 | 76.34 |
| Os07t0674700-01 | Rice | plasma membrane | 79.14 | 75.9 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 80.75 | 75.12 |
| CDX99969 | Canola | cytosol, plastid | 82.35 | 73.33 |
| CDX74138 | Canola | extracellular | 82.89 | 72.77 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 26.2 | 72.06 |
| CDY19736 | Canola | cytosol | 82.35 | 71.63 |
| KRG96775 | Soybean | mitochondrion, nucleus | 86.1 | 71.24 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 33.16 | 68.13 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 82.35 | 67.84 |
| CDY05183 | Canola | mitochondrion | 79.14 | 66.37 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 77.01 | 66.36 |
| CDX80616 | Canola | cytosol | 81.28 | 65.52 |
| Zm00001d037603_P002 | Maize | cytosol | 78.07 | 63.48 |
| CDY18813 | Canola | cytosol, mitochondrion | 82.89 | 62.25 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 81.28 | 61.29 |
| Bra040533.1-P | Field mustard | nucleus | 81.28 | 58.69 |
| CDY46988 | Canola | cytosol | 18.18 | 40.96 |
| Bra039423.1-P | Field mustard | cytosol | 24.06 | 38.14 |
| CDY27753 | Canola | cytosol, mitochondrion | 24.06 | 38.14 |
Protein Annotations
| EntrezGene:102585572 | MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:L18e/L15P_sf |
| UniProt:M1CAV1 | PFAM:PF17135 | EnsemblPlantsGene:PGSC0003DMG400024723 | PGSC:PGSC0003DMG400024723 | EnsemblPlants:PGSC0003DMT400063593 | PANTHER:PTHR10934 |
| PANTHER:PTHR10934:SF9 | InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI000295C92B | RefSeq:XP_006344694.1 |
| SEG:seg | : | : | : | : | : |
Description
60S ribosomal protein L18 [Source:PGSC_GENE;Acc:PGSC0003DMG400024723]
Coordinates
chr1:+:77632309..77635100
Molecular Weight (calculated)
20791.9 Da
IEP (calculated)
11.429
GRAVY (calculated)
-0.467
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIDLKAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLARRT GSKFNAVILK RLFMSKINKP PLSLSRLISY AEGKGDKTVV LVGTVTDDVR AYEVPKLKVC
101: ALKFTKTARA RIEKAGGECL TFDQLALRAP LGQNTLLLRG PKNAREAVKH FGPAPGVPHS HTKPYVRAKG RKFERARGKR KSRGYKV
101: ALKFTKTARA RIEKAGGECL TFDQLALRAP LGQNTLLLRG PKNAREAVKH FGPAPGVPHS HTKPYVRAKG RKFERARGKR KSRGYKV
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.