Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G05590.1 | Thale cress | nucleus | 95.72 | 95.72 |
| Bra009940.1-P | Field mustard | cytosol | 94.12 | 94.12 |
| Bra036611.1-P | Field mustard | cytosol | 94.12 | 94.12 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 43.85 | 90.11 |
| CDY25018 | Canola | cytosol | 93.05 | 88.32 |
| CDY66803 | Canola | cytosol | 94.12 | 88.0 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 86.1 | 86.1 |
| KRH68205 | Soybean | nucleus | 85.56 | 85.56 |
| PGSC0003DMT400081310 | Potato | nucleus | 85.56 | 85.56 |
| KRG92914 | Soybean | nucleus | 85.03 | 85.03 |
| KRG96455 | Soybean | nucleus | 85.03 | 85.03 |
| KRH33871 | Soybean | nucleus | 85.03 | 85.03 |
| OQU92626 | Sorghum | cytosol | 85.03 | 85.03 |
| EER97722 | Sorghum | cytosol | 84.49 | 84.49 |
| TraesCS2A01G109900.1 | Wheat | plastid | 83.96 | 83.96 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 83.96 | 83.96 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 83.96 | 83.96 |
| Zm00001d022462_P001 | Maize | plastid | 83.96 | 83.96 |
| KRH68491 | Soybean | nucleus | 83.96 | 83.96 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 83.96 | 83.96 |
| CDX99969 | Canola | cytosol, plastid | 94.12 | 83.81 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 65.24 | 82.99 |
| EES17748 | Sorghum | cytosol | 83.42 | 82.98 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 82.89 | 82.89 |
| Os03t0341100-01 | Rice | nucleus | 82.89 | 82.89 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 82.89 | 82.89 |
| Zm00001d009848_P001 | Maize | cytosol | 82.35 | 82.35 |
| PGSC0003DMT400063593 | Potato | cytosol | 82.35 | 82.35 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 58.82 | 82.09 |
| Os05t0155100-01 | Rice | nucleus | 82.35 | 81.91 |
| CDY19736 | Canola | cytosol | 94.12 | 81.86 |
| GSMUA_Achr11P... | Banana | cytosol | 57.22 | 79.85 |
| TraesCS1D01G105500.2 | Wheat | golgi | 80.21 | 79.79 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 79.68 | 79.68 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 79.68 | 79.68 |
| AT2G47570.1 | Thale cress | cytosol, nucleus | 79.14 | 79.57 |
| Os07t0674700-01 | Rice | plasma membrane | 82.35 | 78.97 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 82.35 | 76.62 |
| CDX80616 | Canola | cytosol | 93.58 | 75.43 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 85.56 | 71.11 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 34.22 | 70.33 |
| KRG96775 | Soybean | mitochondrion, nucleus | 84.49 | 69.91 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 80.75 | 69.59 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 25.13 | 69.12 |
| Zm00001d037603_P002 | Maize | cytosol | 82.35 | 66.96 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 41.71 | 65.55 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 82.35 | 62.1 |
| Solyc09g025200.1.1 | Tomato | extracellular | 19.79 | 51.39 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | EntrezGene:832848 | UniProt:A0A178UKW4 | EMBL:AC007399 | ProteinID:AED93736.1 |
| ArrayExpress:AT5G27850 | EnsemblPlantsGene:AT5G27850 | RefSeq:AT5G27850 | TAIR:AT5G27850 | RefSeq:AT5G27850-TAIR-G | EnsemblPlants:AT5G27850.1 |
| TAIR:AT5G27850.1 | EMBL:AY056141 | EMBL:AY122996 | EMBL:BT000711 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0022626 | GO:GO:0030529 | InterPro:L18e/L15P_sf |
| RefSeq:NP_198137.1 | ProteinID:OAO94438.1 | PFAM:PF17135 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10934 | PANTHER:PTHR10934:SF3 |
| UniProt:Q940B0 | InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI00000AC070 | : |
Description
RPL18C60S ribosomal protein L18-3 [Source:UniProtKB/Swiss-Prot;Acc:Q940B0]
Coordinates
chr5:+:9873067..9874973
Molecular Weight (calculated)
20968.0 Da
IEP (calculated)
11.611
GRAVY (calculated)
-0.418
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRS NSNFNAVILK RLFMSKVNKA PLSLSRLVEF MTGKDDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.