Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27850.1 | CDX73342 | AT1G35670.1 | 19130088 |
| AT5G27850.1 | CDY37101 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009940.1-P | Field mustard | cytosol | 93.0 | 99.47 |
| CDY25018 | Canola | cytosol | 94.0 | 95.43 |
| AT5G27850.1 | Thale cress | nucleus | 88.0 | 94.12 |
| CDY05185 | Canola | cytosol | 27.5 | 91.67 |
| CDY36892 | Canola | cytosol | 27.5 | 91.67 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 40.5 | 89.01 |
| CDX99969 | Canola | cytosol, plastid | 93.0 | 88.57 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 81.0 | 86.63 |
| CDY19736 | Canola | cytosol | 93.0 | 86.51 |
| PGSC0003DMT400081310 | Potato | nucleus | 79.5 | 85.03 |
| KRH33871 | Soybean | nucleus | 79.5 | 85.03 |
| KRH68205 | Soybean | nucleus | 79.0 | 84.49 |
| CDX80616 | Canola | cytosol | 97.5 | 84.05 |
| CDX74138 | Canola | extracellular | 89.5 | 84.04 |
| KRG96455 | Soybean | nucleus | 78.5 | 83.96 |
| KRG92914 | Soybean | nucleus | 78.5 | 83.96 |
| OQU92626 | Sorghum | cytosol | 78.0 | 83.42 |
| KRH68491 | Soybean | nucleus | 77.5 | 82.89 |
| TraesCS2A01G109900.1 | Wheat | plastid | 77.0 | 82.35 |
| PGSC0003DMT400063593 | Potato | cytosol | 77.0 | 82.35 |
| EER97722 | Sorghum | cytosol | 77.0 | 82.35 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 77.0 | 82.35 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 77.0 | 82.35 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 77.0 | 82.35 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 60.5 | 82.31 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 76.5 | 81.82 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 76.5 | 81.82 |
| Zm00001d022462_P001 | Maize | plastid | 76.5 | 81.82 |
| EES17748 | Sorghum | cytosol | 76.5 | 81.38 |
| Os03t0341100-01 | Rice | nucleus | 75.5 | 80.75 |
| Zm00001d009848_P001 | Maize | cytosol | 75.5 | 80.75 |
| Os05t0155100-01 | Rice | nucleus | 75.5 | 80.32 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 53.5 | 79.85 |
| TraesCS1D01G105500.2 | Wheat | golgi | 74.5 | 79.26 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 74.0 | 79.14 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 74.0 | 79.14 |
| GSMUA_Achr11P... | Banana | cytosol | 53.0 | 79.1 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 88.0 | 77.53 |
| Os07t0674700-01 | Rice | plasma membrane | 74.5 | 76.41 |
| CDY05183 | Canola | mitochondrion | 85.0 | 76.23 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 76.5 | 76.12 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 81.0 | 72.0 |
| CDY18813 | Canola | cytosol, mitochondrion | 88.5 | 71.08 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 32.0 | 70.33 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 75.5 | 69.59 |
| KRG96775 | Soybean | mitochondrion, nucleus | 78.5 | 69.47 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 23.5 | 69.12 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 40.0 | 67.23 |
| Zm00001d037603_P002 | Maize | cytosol | 75.5 | 65.65 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 77.0 | 62.1 |
| CDY46988 | Canola | cytosol | 19.5 | 46.99 |
| CDY27753 | Canola | cytosol, mitochondrion | 23.0 | 38.98 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | GO:A0A078JGU8 | UniProt:A0A078JGU8 | EnsemblPlants:CDY66803 | ProteinID:CDY66803 |
| ProteinID:CDY66803.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00056589001 | InterPro:L18e/L15P_sf | PFAM:PF17135 |
| PANTHER:PTHR10934 | PANTHER:PTHR10934:SF9 | InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI0004EE34C8 |
Description
BnaAnng22990DBnaAnng22990D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JGU8]
Coordinates
chrLK035475:-:12496..13819
Molecular Weight (calculated)
22285.7 Da
IEP (calculated)
11.473
GRAVY (calculated)
-0.296
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: YLHFRFLPST AQAMGIDLIA GGKSKKTKRT APKSDDVYLK LLVKLYRFLV RRTGSKFDAV ILKRLFMSKV NKAPLSLSKL VEFMNGKDGK IAVLVGTITD
101: DLRVHEIPAM KVTALRFTER ARARIEKAGG ECLTFDQLAL VAPLGQNTVL LRGPKNSREA VKHFGPAPGV PHSHSKPYVR AKGRKFEKAR GKRKSRGFKV
101: DLRVHEIPAM KVTALRFTER ARARIEKAGG ECLTFDQLAL VAPLGQNTVL LRGPKNSREA VKHFGPAPGV PHSHSKPYVR AKGRKFEKAR GKRKSRGFKV
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.