Factsheet for Zm00001d037603_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004812_P002
Zm00001d023560_P002
Zm00001d053016_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	Zm00001d004812_P002	AT1G35670.1	19130088
AT5G27850.1	Zm00001d023560_P002	AT1G35670.1	19130088
AT5G27850.1	Zm00001d053016_P002	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009848_P001	Maize	cytosol	81.3	100.0
EES17748	Sorghum	cytosol	80.0	97.87
Os05t0155100-01	Rice	nucleus	78.26	95.74
Zm00001d022462_P001	Maize	plastid	76.96	94.65
TraesCS1B01G127200.1	Wheat	cytosol	75.65	93.05
TraesCS1A01G096500.2	Wheat	cytosol	75.65	93.05
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	36.52	92.31
TraesCS1D01G105500.2	Wheat	golgi	74.35	90.96
GSMUA_Achr11P...	Banana	cytosol	50.43	86.57
GSMUA_Achr5P27080_001	Banana	cytosol	50.43	86.57
VIT_14s0060g01930.t01	Wine grape	cytosol	69.13	85.03
PGSC0003DMT400081310	Potato	nucleus	67.83	83.42
CDY05185	Canola	cytosol	21.74	83.33
CDY36892	Canola	cytosol	21.74	83.33
AT5G27850.1	Thale cress	nucleus	66.96	82.35
KRH68491	Soybean	nucleus	66.96	82.35
KRG96455	Soybean	nucleus	66.96	82.35
Solyc09g075290.2.1	Tomato	nucleus	66.96	82.35
Bra001156.1-P	Field mustard	nucleus	66.96	82.35
KRH68205	Soybean	nucleus	66.52	81.82
KRH33871	Soybean	nucleus	66.52	81.82
KRG92914	Soybean	nucleus	66.52	81.82
AT3G05590.1	Thale cress	nucleus	66.52	81.82
Bra036611.1-P	Field mustard	cytosol	66.52	81.82
GSMUA_Achr2P01730_001	Banana	cytosol	70.87	81.09
Bra009940.1-P	Field mustard	cytosol	65.65	80.75
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	74.35	78.8
PGSC0003DMT400063593	Potato	cytosol	63.48	78.07
VIT_05s0077g02060.t01	Wine grape	mitochondrion	23.04	77.94
Solyc01g099900.2.1	Tomato	nucleus	63.04	77.54
VIT_05s0077g02070.t01	Wine grape	cytosol	49.13	76.87
CDY25018	Canola	cytosol	65.65	76.65
AT2G47570.1	Thale cress	cytosol, nucleus	61.74	76.34
CDY66803	Canola	cytosol	65.65	75.5
CDX99969	Canola	cytosol, plastid	66.52	72.86
CDX74138	Canola	extracellular	66.96	72.3
CDY19736	Canola	cytosol	66.52	71.16
VIT_07s0005g00690.t01	Wine grape	plastid	68.26	69.78
KRG96775	Soybean	mitochondrion, nucleus	66.96	68.14
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	66.96	67.84
CDY05183	Canola	mitochondrion	63.91	65.92
CDX80616	Canola	cytosol	66.09	65.52
GSMUA_Achr8P10280_001	Banana	cytosol	70.0	64.92
CDY18813	Canola	cytosol, mitochondrion	66.96	61.85
VIT_14s0036g01220.t01	Wine grape	cytosol	30.43	58.82
Bra040533.1-P	Field mustard	nucleus	65.65	58.3
Solyc09g025200.1.1	Tomato	extracellular	16.09	51.39
CDY46988	Canola	cytosol	13.91	38.55
Bra039423.1-P	Field mustard	cytosol	18.7	36.44
CDY27753	Canola	cytosol, mitochondrion	18.7	36.44

Protein Annotations

EntrezGene:100194344	EntrezGene:103635488	MapMan:17.1.2.1.18	Gene3D:3.100.10.10	UniProt:A0A1D6LZA7	ProteinID:AQK84427.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:L18e/L15P_sf	PFAM:PF17135	ScanProsite:PS01106	PANTHER:PTHR10934
PANTHER:PTHR10934:SF5	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	InterPro:Ribosomal_L18e_CS	SUPFAM:SSF52080	UniParc:UPI000843140B
EnsemblPlantsGene:Zm00001d037603	EnsemblPlants:Zm00001d037603_P002	EnsemblPlants:Zm00001d037603_T002	:	:	:

Description

60S ribosomal protein L18-3

Coordinates

chr6:+:131345164..131348227

Molecular Weight (calculated)

25961.1 Da

IEP (calculated)

11.737

GRAVY (calculated)

-0.328

Length

230 amino acids

Sequence
(BLAST)

001: MGIDLVAGGR NKKTKRTAPK SDDVYLKLLV KVSGVVIFDR SARGRVFGSE NAVCHVVLRF CVSRDFDLCY ARVQLYRFLV RRTKSNFNAV ILKRLFMSKT
101: NRPPISMRRL VKFMEGKEKN IAVIVGTVTD DKRIQEVPAM KVTALRFTET ARARIVNAGG ECLTFDQLAL RAPLGENTVL LRGPKNAREA VRHFGKAPGV
201: PHSHTKPYVR SKGRKFEKAR GRRNSRGFKV

Best Arabidopsis Sequence Match ( AT5G27850.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRS NSNFNAVILK RLFMSKVNKA PLSLSRLVEF MTGKDDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18C60S ribosomal protein L18-3 [Source:UniProtKB/Swiss-Prot;Acc:Q940B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.