CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001156.1-P	Field mustard	nucleus	87.79	100.0
AT3G05590.1	Thale cress	nucleus	85.92	97.86
CDY05185	Canola	cytosol	26.29	93.33
CDY36892	Canola	cytosol	26.29	93.33
CDY25018	Canola	cytosol	83.57	90.36
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	38.5	90.11
CDY66803	Canola	cytosol	84.04	89.5
VIT_14s0060g01930.t01	Wine grape	cytosol	77.0	87.7
PGSC0003DMT400081310	Potato	nucleus	76.53	87.17
KRH33871	Soybean	nucleus	75.59	86.1
KRH68205	Soybean	nucleus	75.12	85.56
OQU92626	Sorghum	cytosol	74.65	85.03
KRG96455	Soybean	nucleus	74.65	85.03
KRG92914	Soybean	nucleus	74.65	85.03
TraesCS2A01G109900.1	Wheat	plastid	74.18	84.49
VIT_05s0077g02070.t01	Wine grape	cytosol	58.22	84.35
TraesCS2D01G110100.1	Wheat	golgi, unclear	73.71	83.96
TraesCS2B01G127900.1	Wheat	cytosol	73.71	83.96
KRH68491	Soybean	nucleus	73.71	83.96
HORVU2Hr1G018820.1	Barley	cytosol	73.71	83.96
EER97722	Sorghum	cytosol	73.71	83.96
CDX99969	Canola	cytosol, plastid	82.63	83.81
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	89.2	83.7
TraesCS4D01G169400.1	Wheat	cytosol, unclear	73.24	83.42
TraesCS4B01G166800.1	Wheat	cytosol	73.24	83.42
Zm00001d022462_P001	Maize	plastid	73.24	83.42
EES17748	Sorghum	cytosol	73.24	82.98
Os03t0341100-01	Rice	nucleus	72.77	82.89
PGSC0003DMT400063593	Potato	cytosol	72.77	82.89
Zm00001d009848_P001	Maize	cytosol	72.3	82.35
Os05t0155100-01	Rice	nucleus	72.3	81.91
CDY19736	Canola	cytosol	82.63	81.86
GSMUA_Achr5P27080_001	Banana	cytosol	51.17	81.34
TraesCS1D01G105500.2	Wheat	golgi	71.36	80.85
TraesCS1B01G127200.1	Wheat	cytosol	70.89	80.75
TraesCS1A01G096500.2	Wheat	cytosol	70.89	80.75
CDY05183	Canola	mitochondrion	84.04	80.27
GSMUA_Achr11P...	Banana	cytosol	50.23	79.85
Os07t0674700-01	Rice	plasma membrane	71.83	78.46
CDX80616	Canola	cytosol	84.98	78.02
GSMUA_Achr2P01730_001	Banana	cytosol	72.77	77.11
CDY18813	Canola	cytosol, mitochondrion	89.2	76.31
VIT_07s0005g00690.t01	Wine grape	plastid	77.0	72.89
HORVU2Hr1G018840.4	Barley	cytosol	30.52	71.43
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	72.77	71.43
KRG96775	Soybean	mitochondrion, nucleus	75.12	70.8
VIT_05s0077g02060.t01	Wine grape	mitochondrion	22.54	70.59
VIT_14s0036g01220.t01	Wine grape	cytosol	38.03	68.07
Zm00001d037603_P002	Maize	cytosol	72.3	66.96
GSMUA_Achr8P10280_001	Banana	cytosol	72.77	62.5
CDY27753	Canola	cytosol, mitochondrion	25.35	45.76
CDY46988	Canola	cytosol	17.37	44.58

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	GO:A0A078CGP6	EnsemblPlants:CDX74138	ProteinID:CDX74138	ProteinID:CDX74138.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00111897001	InterPro:L18e/L15P_sf	PFAM:PF17135	PANTHER:PTHR10934
PANTHER:PTHR10934:SF9	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	SignalP:SignalP-noTM	UniParc:UPI0004EF010D

Description

BnaA03g29090D

Coordinates

chrLK031800:-:1512966..1514274

Molecular Weight (calculated)

23772.6 Da

IEP (calculated)

11.700

GRAVY (calculated)

-0.317

Length

213 amino acids

Sequence
(BLAST)

001: MLGLFLIFIT SLQKLRRGGT TSPDATMGID LIAGGKSKKT KRTAPKSDDV YLKLTVKLYR FLVRRTQSKF NAVILKRLFM SKVNKAPLSL SRLVEFMTGK
101: EDKIAVLVGT ITDDLRVHEI PAIKVTALRF TERARARIEK AGGECLTFDQ LALRAPLGQN TVLLRGPKNS REAVKHFGPA PGVPHSHSKP YVRSKGRKFE
201: KARGKRKSRG FKV

Best Arabidopsis Sequence Match ( AT3G05590.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.