Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27850.1 | CDX73342 | AT1G35670.1 | 19130088 |
| AT5G27850.1 | CDY37101 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036611.1-P | Field mustard | cytosol | 86.98 | 100.0 |
| AT5G27850.1 | Thale cress | nucleus | 81.86 | 94.12 |
| CDY25018 | Canola | cytosol | 86.05 | 93.91 |
| CDX99969 | Canola | cytosol, plastid | 91.63 | 93.81 |
| CDY66803 | Canola | cytosol | 86.51 | 93.0 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 38.6 | 91.21 |
| CDY05185 | Canola | cytosol | 24.65 | 88.33 |
| CDY36892 | Canola | cytosol | 24.65 | 88.33 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 76.28 | 87.7 |
| PGSC0003DMT400081310 | Potato | nucleus | 74.88 | 86.1 |
| KRH33871 | Soybean | nucleus | 74.42 | 85.56 |
| KRH68205 | Soybean | nucleus | 73.95 | 85.03 |
| KRG96455 | Soybean | nucleus | 73.49 | 84.49 |
| KRG92914 | Soybean | nucleus | 73.49 | 84.49 |
| TraesCS2A01G109900.1 | Wheat | plastid | 72.56 | 83.42 |
| OQU92626 | Sorghum | cytosol | 72.56 | 83.42 |
| KRH68491 | Soybean | nucleus | 72.56 | 83.42 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 72.56 | 83.42 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 72.56 | 83.42 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 72.56 | 83.42 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 72.09 | 82.89 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 72.09 | 82.89 |
| CDX74138 | Canola | extracellular | 81.86 | 82.63 |
| EES17748 | Sorghum | cytosol | 72.09 | 82.45 |
| PGSC0003DMT400063593 | Potato | cytosol | 71.63 | 82.35 |
| EER97722 | Sorghum | cytosol | 71.63 | 82.35 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 56.28 | 82.31 |
| Zm00001d009848_P001 | Maize | cytosol | 71.16 | 81.82 |
| Zm00001d022462_P001 | Maize | plastid | 71.16 | 81.82 |
| Os05t0155100-01 | Rice | nucleus | 71.16 | 81.38 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 50.7 | 81.34 |
| TraesCS1D01G105500.2 | Wheat | golgi | 70.7 | 80.85 |
| Os03t0341100-01 | Rice | nucleus | 70.23 | 80.75 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 70.23 | 80.75 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 70.23 | 80.75 |
| CDX80616 | Canola | cytosol | 86.51 | 80.17 |
| GSMUA_Achr11P... | Banana | cytosol | 49.77 | 79.85 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 82.33 | 77.97 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 72.09 | 77.11 |
| Os07t0674700-01 | Rice | plasma membrane | 69.3 | 76.41 |
| CDY05183 | Canola | mitochondrion | 79.07 | 76.23 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 76.74 | 73.33 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 22.79 | 72.06 |
| KRG96775 | Soybean | mitochondrion, nucleus | 74.88 | 71.24 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 71.63 | 70.97 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 29.77 | 70.33 |
| CDY18813 | Canola | cytosol, mitochondrion | 81.4 | 70.28 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 37.21 | 67.23 |
| Zm00001d037603_P002 | Maize | cytosol | 71.16 | 66.52 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 73.02 | 63.31 |
| CDY46988 | Canola | cytosol | 18.14 | 46.99 |
| CDY27753 | Canola | cytosol, mitochondrion | 22.79 | 41.53 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | GO:A0A078G326 | UniProt:A0A078G326 | EnsemblPlants:CDY19736 | ProteinID:CDY19736 |
| ProteinID:CDY19736.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00009473001 | InterPro:L18e/L15P_sf | PFAM:PF17135 |
| PANTHER:PTHR10934 | PANTHER:PTHR10934:SF9 | InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI0004EE6EB3 |
Description
BnaA09g03890DBnaA09g03890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G326]
Coordinates
chrLK032100:+:142458..144454
Molecular Weight (calculated)
23736.8 Da
IEP (calculated)
11.243
GRAVY (calculated)
-0.189
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MIDVLCLKCG TLMIMQKASV PSSSVTDAMG IDLIAGGKSK KTKRTAPKSD DVYLKLLVKL YRFLVRRTGS KFDAVILKRL FMSKVNKAPL SLSKLVEFMK
101: GKDGKIAVLV GTITDDLRVH EIPAMKVTAL RFTERARARI EKAGGECLTF DQLALVAPLG QNTVLLRGPK NSREAVKHFG KAPGVPHSHT KPYVRAKGRK
201: FEKARGKRKS RGFKV
101: GKDGKIAVLV GTITDDLRVH EIPAMKVTAL RFTERARARI EKAGGECLTF DQLALVAPLG QNTVLLRGPK NSREAVKHFG KAPGVPHSHT KPYVRAKGRK
201: FEKARGKRKS RGFKV
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.