Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
- plastid 3
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27850.1 | CDX73342 | AT1G35670.1 | 19130088 |
| AT5G27850.1 | CDY37101 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036611.1-P | Field mustard | cytosol | 89.05 | 100.0 |
| AT5G27850.1 | Thale cress | nucleus | 83.81 | 94.12 |
| CDY25018 | Canola | cytosol | 88.1 | 93.91 |
| CDY66803 | Canola | cytosol | 88.57 | 93.0 |
| CDY19736 | Canola | cytosol | 93.81 | 91.63 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 39.52 | 91.21 |
| CDY05185 | Canola | cytosol | 25.24 | 88.33 |
| CDY36892 | Canola | cytosol | 25.24 | 88.33 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 78.1 | 87.7 |
| PGSC0003DMT400081310 | Potato | nucleus | 76.67 | 86.1 |
| KRH33871 | Soybean | nucleus | 76.19 | 85.56 |
| KRH68205 | Soybean | nucleus | 75.71 | 85.03 |
| KRG96455 | Soybean | nucleus | 75.24 | 84.49 |
| KRG92914 | Soybean | nucleus | 75.24 | 84.49 |
| TraesCS2A01G109900.1 | Wheat | plastid | 74.29 | 83.42 |
| OQU92626 | Sorghum | cytosol | 74.29 | 83.42 |
| KRH68491 | Soybean | nucleus | 74.29 | 83.42 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 74.29 | 83.42 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 74.29 | 83.42 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 74.29 | 83.42 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 73.81 | 82.89 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 73.81 | 82.89 |
| CDX74138 | Canola | extracellular | 83.81 | 82.63 |
| EES17748 | Sorghum | cytosol | 73.81 | 82.45 |
| EER97722 | Sorghum | cytosol | 73.33 | 82.35 |
| PGSC0003DMT400063593 | Potato | cytosol | 73.33 | 82.35 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 57.62 | 82.31 |
| Zm00001d009848_P001 | Maize | cytosol | 72.86 | 81.82 |
| Zm00001d022462_P001 | Maize | plastid | 72.86 | 81.82 |
| Os05t0155100-01 | Rice | nucleus | 72.86 | 81.38 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 51.9 | 81.34 |
| TraesCS1D01G105500.2 | Wheat | golgi | 72.38 | 80.85 |
| Os03t0341100-01 | Rice | nucleus | 71.9 | 80.75 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 71.9 | 80.75 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 71.9 | 80.75 |
| CDX80616 | Canola | cytosol | 89.05 | 80.6 |
| GSMUA_Achr11P... | Banana | cytosol | 50.95 | 79.85 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 83.81 | 77.53 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 73.81 | 77.11 |
| Os07t0674700-01 | Rice | plasma membrane | 70.95 | 76.41 |
| CDY05183 | Canola | mitochondrion | 80.48 | 75.78 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 78.57 | 73.33 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 23.33 | 72.06 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 73.81 | 71.43 |
| KRG96775 | Soybean | mitochondrion, nucleus | 76.19 | 70.8 |
| CDY18813 | Canola | cytosol, mitochondrion | 83.81 | 70.68 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 30.48 | 70.33 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 38.1 | 67.23 |
| Zm00001d037603_P002 | Maize | cytosol | 72.86 | 66.52 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 75.24 | 63.71 |
| CDY46988 | Canola | cytosol | 18.57 | 46.99 |
| CDY27753 | Canola | cytosol, mitochondrion | 22.38 | 39.83 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | GO:A0A078EGR1 | EnsemblPlants:CDX99969 | ProteinID:CDX99969 | ProteinID:CDX99969.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00109436001 | InterPro:L18e/L15P_sf | PFAM:PF17135 | PANTHER:PTHR10934 |
| PANTHER:PTHR10934:SF9 | InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI0004EE03BC | SEG:seg |
Description
BnaC09g03320D
Coordinates
chrLK031916:-:15589..17158
Molecular Weight (calculated)
23149.8 Da
IEP (calculated)
11.364
GRAVY (calculated)
-0.284
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MCLLHSQKSP LAPSVPSSSV TDAMGIDLIA GGKSKKTKRT APKSDDVYLK LLVKLYRFLV RRTGSKFDAV ILKRLFMSKV NKAPLSLSKL VEFMKGKDGK
101: IAVLVGTITD DLRVHEIPAM KVTALRFTER ARARIEKAGG ECLTFDQLAL VAPLGQNTVL LRGPKNSREA VKHFGKAPGV PHSHTKPYVR AKGRKFEKAR
201: GKRKSRGFKV
101: IAVLVGTITD DLRVHEIPAM KVTALRFTER ARARIEKAGG ECLTFDQLAL VAPLGQNTVL LRGPKNSREA VKHFGKAPGV PHSHTKPYVR AKGRKFEKAR
201: GKRKSRGFKV
001: IDLIAGGKSK KTKRTEPKSD DVYLKLLVKA NRYLVRRTES KFNAVILKRL FMSKVNKAPL SLSRLVRYMD GKDGKIAVIV GTVTDDVRIE DVPALTVTAL
101: RFTESARARI HKAGGECLTF DQLALPCPTW SENTVLLRGP KNTREAVKHF GPAPGVPHSH TKPYVRQTGK KIEIARGRRR SRGFKV
101: RFTESARARI HKAGGECLTF DQLALPCPTW SENTVLLRGP KNTREAVKHF GPAPGVPHSH TKPYVRQTGK KIEIARGRRR SRGFKV
Arabidopsis Description
Ribosomal protein L18e/L15 superfamily protein [Source:TAIR;Acc:AT2G47570]
SUBAcon: [nucleus,cytosol]
SUBAcon: [nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.