Factsheet for GSMUA_Achr11P20550_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT5G27850.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT5G27850.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT5G27850.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	64.93	95.6
GSMUA_Achr5P27080_001	Banana	cytosol	95.52	95.52
VIT_05s0077g02060.t01	Wine grape	mitochondrion	38.81	76.47
CDY36892	Canola	cytosol	32.84	73.33
CDY05185	Canola	cytosol	32.84	73.33
GSMUA_Achr11P...	Banana	endoplasmic reticulum	33.58	66.18
TraesCS4D01G169400.1	Wheat	cytosol, unclear	88.06	63.1
TraesCS4B01G166800.1	Wheat	cytosol	88.06	63.1
EES17748	Sorghum	cytosol	88.06	62.77
GSMUA_Achr2P01730_001	Banana	cytosol	94.03	62.69
OQU92626	Sorghum	cytosol	87.31	62.57
VIT_14s0060g01930.t01	Wine grape	cytosol	87.31	62.57
Zm00001d009848_P001	Maize	cytosol	86.57	62.03
KRG96455	Soybean	nucleus	85.82	61.5
TraesCS2B01G127900.1	Wheat	cytosol	85.07	60.96
TraesCS2D01G110100.1	Wheat	golgi, unclear	85.07	60.96
TraesCS2A01G109900.1	Wheat	plastid	85.07	60.96
HORVU2Hr1G018820.1	Barley	cytosol	85.07	60.96
KRH33871	Soybean	nucleus	85.07	60.96
KRH68205	Soybean	nucleus	85.07	60.96
Zm00001d022462_P001	Maize	plastid	85.07	60.96
KRH68491	Soybean	nucleus	85.07	60.96
Os03t0341100-01	Rice	nucleus	85.07	60.96
Os05t0155100-01	Rice	nucleus	85.07	60.64
KRG92914	Soybean	nucleus	84.33	60.43
EER97722	Sorghum	cytosol	84.33	60.43
PGSC0003DMT400081310	Potato	nucleus	82.84	59.36
TraesCS1D01G105500.2	Wheat	golgi	82.09	58.51
TraesCS1B01G127200.1	Wheat	cytosol	81.34	58.29
TraesCS1A01G096500.2	Wheat	cytosol	81.34	58.29
Solyc09g075290.2.1	Tomato	nucleus	81.34	58.29
Os07t0674700-01	Rice	plasma membrane	83.58	57.44
Bra036611.1-P	Field mustard	cytosol	79.85	57.22
Bra001156.1-P	Field mustard	nucleus	79.85	57.22
AT5G27850.1	Thale cress	nucleus	79.85	57.22
AT3G05590.1	Thale cress	nucleus	79.1	56.68
Bra009940.1-P	Field mustard	cytosol	78.36	56.15
PGSC0003DMT400063593	Potato	cytosol	78.36	56.15
Solyc01g099900.2.1	Tomato	nucleus	77.61	55.62
CDY25018	Canola	cytosol	79.1	53.81
AT2G47570.1	Thale cress	cytosol, nucleus	73.88	53.23
CDY66803	Canola	cytosol	79.1	53.0
GSMUA_Achr8P10280_001	Banana	cytosol	97.76	52.82
VIT_07s0005g00690.t01	Wine grape	plastid	86.57	51.56
CDX99969	Canola	cytosol, plastid	79.85	50.95
KRG96775	Soybean	mitochondrion, nucleus	85.07	50.44
Zm00001d037603_P002	Maize	cytosol	86.57	50.43
CDX74138	Canola	extracellular	79.85	50.23
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	81.34	50.23
CDY19736	Canola	cytosol	79.85	49.77
VIT_05s0077g02070.t01	Wine grape	cytosol	54.48	49.66
Solyc09g025200.1.1	Tomato	extracellular	26.12	48.61
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	79.85	47.14
CDY05183	Canola	mitochondrion	78.36	47.09
CDX80616	Canola	cytosol	79.1	45.69
CDY18813	Canola	cytosol, mitochondrion	79.85	42.97
Bra040533.1-P	Field mustard	nucleus	77.61	40.15
VIT_14s0036g01220.t01	Wine grape	cytosol	27.61	31.09
HORVU2Hr1G018840.4	Barley	cytosol	13.43	19.78
CDY46988	Canola	cytosol	3.73	6.02
GSMUA_Achr11P...	Banana	endoplasmic reticulum	0.75	2.56
CDY27753	Canola	cytosol, mitochondrion	0.75	0.85
Bra039423.1-P	Field mustard	cytosol	0.75	0.85

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr11G20550_001	EnsemblPlants:GSMUA_Achr11P20550_001
EnsemblPlants:GSMUA_Achr11T20550_001	InterPro:L18e/L15P_sf	UniProt:M0RTY5	PFAM:PF17135	PANTHER:PTHR10934	PANTHER:PTHR10934:SF5
InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI000294E6E9	SEG:seg	:

Description

60S ribosomal protein L18-2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G20550_001]

Coordinates

chr11:+:21485623..21489229

Molecular Weight (calculated)

15032.6 Da

IEP (calculated)

12.147

GRAVY (calculated)

-0.500

Length

134 amino acids

Sequence
(BLAST)

001: MSKINRPPIS LKRLITFMNG KDNKIAVIVG TVTDDKRVYE VPALKVTALR FTETARARIL KAGGECLTFD QLALRAPLGQ NTVLLRGPKN AREAVRHFGK
101: APGVPHSHTK PYIRSKGRKF ERARGRRNSR GFRV

Best Arabidopsis Sequence Match ( AT3G05590.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.