Factsheet for Solyc09g075290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081310	Potato	nucleus	98.4	98.4
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	43.32	89.01
Solyc01g099900.2.1	Tomato	nucleus	88.77	88.77
KRH68205	Soybean	nucleus	87.7	87.7
KRG96455	Soybean	nucleus	87.17	87.17
OQU92626	Sorghum	cytosol	83.42	83.42
TraesCS4B01G166800.1	Wheat	cytosol	82.89	82.89
GSMUA_Achr5P27080_001	Banana	cytosol	59.36	82.84
EER97722	Sorghum	cytosol	82.35	82.35
Zm00001d009848_P001	Maize	cytosol	82.35	82.35
EES17748	Sorghum	cytosol	82.35	81.91
Os05t0155100-01	Rice	nucleus	82.35	81.91
TraesCS4D01G169400.1	Wheat	cytosol, unclear	81.82	81.82
Zm00001d022462_P001	Maize	plastid	81.82	81.82
TraesCS1A01G096500.2	Wheat	cytosol	81.82	81.82
TraesCS1B01G127200.1	Wheat	cytosol	81.82	81.82
GSMUA_Achr11P...	Banana	cytosol	58.29	81.34
TraesCS2A01G109900.1	Wheat	plastid	81.28	81.28
TraesCS1D01G105500.2	Wheat	golgi	81.28	80.85
Os03t0341100-01	Rice	nucleus	80.75	80.75
HORVU2Hr1G018820.1	Barley	cytosol	80.75	80.75
TraesCS2B01G127900.1	Wheat	cytosol	80.75	80.75
TraesCS2D01G110100.1	Wheat	golgi, unclear	80.75	80.75
GSMUA_Achr2P01730_001	Banana	cytosol	82.89	77.11
Os07t0674700-01	Rice	plasma membrane	80.21	76.92
HORVU2Hr1G018840.4	Barley	cytosol	35.29	72.53
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	80.75	69.59
Zm00001d037603_P002	Maize	cytosol	82.35	66.96
GSMUA_Achr8P10280_001	Banana	cytosol	83.42	62.9
Solyc09g025200.1.1	Tomato	extracellular	22.46	58.33

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	UniProt:K4CVA6	InterPro:L18e/L15P_sf	PFAM:PF17135
PANTHER:PTHR10934	PANTHER:PTHR10934:SF9	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	EnsemblPlantsGene:Solyc09g075290.2
EnsemblPlants:Solyc09g075290.2.1	UniParc:UPI000276B970	:	:	:	:

Description

No Description!

Coordinates

chr9:+:67020011..67022292

Molecular Weight (calculated)

20842.8 Da

IEP (calculated)

11.443

GRAVY (calculated)

-0.424

Length

187 amino acids

Sequence
(BLAST)

001: MGIDLVAGGK SKKTKRIAPK SDDVYLKLLV KLYRFLSRRT GSKFNAVILK RLFMSKINKA PLSLSRLVTY MTGKEDNIAV VVGTVTDDVR AYEVPKIKVT
101: ALRFTETARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGKAPGVPHS HTKPYVRAKG RKFERARGKR NSRGYKA

Best Arabidopsis Sequence Match ( AT3G05590.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.