Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27850.1 | PGSC0003DMT400002331 | AT1G35670.1 | 19130088 |
| AT5G27850.1 | PGSC0003DMT400067082 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g075290.2.1 | Tomato | nucleus | 98.4 | 98.4 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 43.85 | 90.11 |
| PGSC0003DMT400063593 | Potato | cytosol | 89.3 | 89.3 |
| KRH68205 | Soybean | nucleus | 87.7 | 87.7 |
| Bra001156.1-P | Field mustard | nucleus | 87.17 | 87.17 |
| KRG96455 | Soybean | nucleus | 87.17 | 87.17 |
| AT3G05590.1 | Thale cress | nucleus | 86.63 | 86.63 |
| Bra036611.1-P | Field mustard | cytosol | 86.1 | 86.1 |
| AT5G27850.1 | Thale cress | nucleus | 85.56 | 85.56 |
| Bra009940.1-P | Field mustard | cytosol | 85.03 | 85.03 |
| OQU92626 | Sorghum | cytosol | 84.49 | 84.49 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 60.43 | 84.33 |
| Zm00001d009848_P001 | Maize | cytosol | 83.42 | 83.42 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 83.42 | 83.42 |
| EER97722 | Sorghum | cytosol | 83.42 | 83.42 |
| EES17748 | Sorghum | cytosol | 83.42 | 82.98 |
| Os05t0155100-01 | Rice | nucleus | 83.42 | 82.98 |
| Zm00001d022462_P001 | Maize | plastid | 82.89 | 82.89 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 82.89 | 82.89 |
| GSMUA_Achr11P... | Banana | cytosol | 59.36 | 82.84 |
| TraesCS2A01G109900.1 | Wheat | plastid | 82.35 | 82.35 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 81.82 | 81.82 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 81.82 | 81.82 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 81.82 | 81.82 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 81.82 | 81.82 |
| Os03t0341100-01 | Rice | nucleus | 81.82 | 81.82 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 81.82 | 81.82 |
| CDY05185 | Canola | cytosol | 26.2 | 81.67 |
| CDY36892 | Canola | cytosol | 26.2 | 81.67 |
| TraesCS1D01G105500.2 | Wheat | golgi | 81.28 | 80.85 |
| CDY25018 | Canola | cytosol | 83.96 | 79.7 |
| AT2G47570.1 | Thale cress | cytosol, nucleus | 79.14 | 79.57 |
| CDY66803 | Canola | cytosol | 85.03 | 79.5 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 83.96 | 78.11 |
| Os07t0674700-01 | Rice | plasma membrane | 81.28 | 77.95 |
| CDX99969 | Canola | cytosol, plastid | 86.1 | 76.67 |
| CDX74138 | Canola | extracellular | 87.17 | 76.53 |
| CDY19736 | Canola | cytosol | 86.1 | 74.88 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 87.17 | 71.81 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 34.76 | 71.43 |
| CDY05183 | Canola | mitochondrion | 83.42 | 69.96 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 80.75 | 69.59 |
| CDX80616 | Canola | cytosol | 84.49 | 68.1 |
| Zm00001d037603_P002 | Maize | cytosol | 83.42 | 67.83 |
| CDY18813 | Canola | cytosol, mitochondrion | 87.17 | 65.46 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 84.49 | 63.71 |
| Bra040533.1-P | Field mustard | nucleus | 85.56 | 61.78 |
| CDY46988 | Canola | cytosol | 18.18 | 40.96 |
| Bra039423.1-P | Field mustard | cytosol | 23.53 | 37.29 |
| CDY27753 | Canola | cytosol, mitochondrion | 23.53 | 37.29 |
Protein Annotations
| EntrezGene:102585572 | EntrezGene:102604004 | MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:L18e/L15P_sf | UniProt:M1D4J7 | PFAM:PF17135 | EnsemblPlantsGene:PGSC0003DMG400031789 | PGSC:PGSC0003DMG400031789 | EnsemblPlants:PGSC0003DMT400081310 |
| PANTHER:PTHR10934 | PANTHER:PTHR10934:SF9 | InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI000294C1C6 |
| RefSeq:XP_006344694.1 | RefSeq:XP_006359857.1 | : | : | : | : |
Description
60S ribosomal protein L18 [Source:PGSC_GENE;Acc:PGSC0003DMG400031789]
Coordinates
chr9:+:52802327..52804718
Molecular Weight (calculated)
20868.8 Da
IEP (calculated)
11.443
GRAVY (calculated)
-0.396
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIDLVAGGK SKKTKRIAPK SDDVYLKLLV KLYRFLARRT GSKFNAVILK RLFMSKINKA PLSLSRLVTY MTGKEDNIAV IVGTVTDDVR AYEVPKIKVT
101: ALRFTETARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGKAPGVPHS HTKPYVRAKG RKFERARGKR NSRGYKV
101: ALRFTETARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGKAPGVPHS HTKPYVRAKG RKFERARGKR NSRGYKV
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.