CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039423.1-P	Field mustard	cytosol	99.15	99.15
HORVU2Hr1G018840.4	Barley	cytosol	34.75	45.05
VIT_14s0036g01220.t01	Wine grape	cytosol	31.36	31.09
VIT_05s0077g02070.t01	Wine grape	cytosol	38.14	30.61
CDY46988	Canola	cytosol	19.49	27.71
CDX74138	Canola	extracellular	45.76	25.35
KRH33871	Soybean	nucleus	38.14	24.06
PGSC0003DMT400063593	Potato	cytosol	38.14	24.06
VIT_14s0060g01930.t01	Wine grape	cytosol	38.14	24.06
KRH68205	Soybean	nucleus	37.29	23.53
KRG92914	Soybean	nucleus	37.29	23.53
KRH68491	Soybean	nucleus	37.29	23.53
PGSC0003DMT400081310	Potato	nucleus	37.29	23.53
CDY25018	Canola	cytosol	38.98	23.35
CDY66803	Canola	cytosol	38.98	23.0
EER97722	Sorghum	cytosol	36.44	22.99
Zm00001d009848_P001	Maize	cytosol	36.44	22.99
OQU92626	Sorghum	cytosol	36.44	22.99
Zm00001d022462_P001	Maize	plastid	36.44	22.99
KRG96455	Soybean	nucleus	36.44	22.99
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	44.07	22.91
EES17748	Sorghum	cytosol	36.44	22.87
CDY19736	Canola	cytosol	41.53	22.79
TraesCS1A01G096500.2	Wheat	cytosol	35.59	22.46
TraesCS2A01G109900.1	Wheat	plastid	35.59	22.46
Os03t0341100-01	Rice	nucleus	35.59	22.46
TraesCS1B01G127200.1	Wheat	cytosol	35.59	22.46
TraesCS2B01G127900.1	Wheat	cytosol	35.59	22.46
HORVU2Hr1G018820.1	Barley	cytosol	35.59	22.46
TraesCS2D01G110100.1	Wheat	golgi, unclear	35.59	22.46
TraesCS4D01G169400.1	Wheat	cytosol, unclear	35.59	22.46
CDX99969	Canola	cytosol, plastid	39.83	22.38
Os05t0155100-01	Rice	nucleus	35.59	22.34
TraesCS1D01G105500.2	Wheat	golgi	35.59	22.34
CDY18813	Canola	cytosol, mitochondrion	46.61	22.09
Os07t0674700-01	Rice	plasma membrane	36.44	22.05
AT2G47570.1	Thale cress	cytosol, nucleus	34.75	22.04
TraesCS4B01G166800.1	Wheat	cytosol	34.75	21.93
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	38.98	21.2
GSMUA_Achr2P01730_001	Banana	cytosol	35.59	20.9
KRG96775	Soybean	mitochondrion, nucleus	39.83	20.8
CDX80616	Canola	cytosol	40.68	20.69
CDY05183	Canola	mitochondrion	38.98	20.63
VIT_07s0005g00690.t01	Wine grape	plastid	38.14	20.0
Zm00001d037603_P002	Maize	cytosol	36.44	18.7
GSMUA_Achr8P10280_001	Banana	cytosol	38.14	18.15
CDY36892	Canola	cytosol	3.39	6.67
CDY05185	Canola	cytosol	3.39	6.67
VIT_05s0077g02060.t01	Wine grape	mitochondrion	1.69	2.94
GSMUA_Achr5P27080_001	Banana	cytosol	0.85	0.75
GSMUA_Achr11P...	Banana	cytosol	0.85	0.75
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	0.0	0.0

Protein Annotations

Gene3D:3.100.10.10	MapMan:35.1	GO:A0A078GT21	UniProt:A0A078GT21	EnsemblPlants:CDY27753	ProteinID:CDY27753
ProteinID:CDY27753.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00038557001	PFAM:PF17135	PANTHER:PTHR10934
PANTHER:PTHR10934:SF9	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	UniParc:UPI0004EDDCA5	SEG:seg	:

Description

BnaA05g31620DBnaA05g31620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GT21]

Coordinates

chrLK032209:-:247667..248710

Molecular Weight (calculated)

13096.3 Da

IEP (calculated)

10.752

GRAVY (calculated)

-0.071

Length

118 amino acids

Sequence
(BLAST)

001: MRAALQAAAL LNVTHLRMFS DNQTLIRAIN VKLFEEKKIY GIVKDIEATF LLCYGGGGGT TTSPEKATMG IDLIAGGKSK KTKRTAPKSE DVYLKLTVKL
101: YRFLVRRTQS KFNAVILK

Best Arabidopsis Sequence Match ( AT3G05590.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.