CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	KRG91803	AT1G35670.1	19130088
AT5G27850.1	KRH34983	AT1G35670.1	19130088
AT5G27850.1	KRH34984	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33871	Soybean	nucleus	98.4	98.4
KRH68205	Soybean	nucleus	97.33	97.33
KRG96455	Soybean	nucleus	96.79	96.79
KRH68491	Soybean	nucleus	95.19	95.19
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	45.45	93.41
VIT_14s0060g01930.t01	Wine grape	cytosol	92.51	92.51
PGSC0003DMT400063593	Potato	cytosol	86.63	86.63
Solyc01g099900.2.1	Tomato	nucleus	86.1	86.1
GSMUA_Achr5P27080_001	Banana	cytosol	60.96	85.07
AT3G05590.1	Thale cress	nucleus	85.03	85.03
Bra001156.1-P	Field mustard	nucleus	85.03	85.03
AT5G27850.1	Thale cress	nucleus	85.03	85.03
OQU92626	Sorghum	cytosol	84.49	84.49
Bra009940.1-P	Field mustard	cytosol	84.49	84.49
Bra036611.1-P	Field mustard	cytosol	84.49	84.49
GSMUA_Achr11P...	Banana	cytosol	60.43	84.33
EER97722	Sorghum	cytosol	83.42	83.42
TraesCS4B01G166800.1	Wheat	cytosol	82.89	82.89
EES17748	Sorghum	cytosol	82.89	82.45
TraesCS2A01G109900.1	Wheat	plastid	82.35	82.35
TraesCS4D01G169400.1	Wheat	cytosol, unclear	82.35	82.35
Zm00001d022462_P001	Maize	plastid	82.35	82.35
TraesCS2B01G127900.1	Wheat	cytosol	81.82	81.82
TraesCS2D01G110100.1	Wheat	golgi, unclear	81.82	81.82
Zm00001d009848_P001	Maize	cytosol	81.82	81.82
HORVU2Hr1G018820.1	Barley	cytosol	81.82	81.82
Os05t0155100-01	Rice	nucleus	81.82	81.38
TraesCS1D01G105500.2	Wheat	golgi	81.82	81.38
Os03t0341100-01	Rice	nucleus	81.28	81.28
TraesCS1A01G096500.2	Wheat	cytosol	81.28	81.28
TraesCS1B01G127200.1	Wheat	cytosol	81.28	81.28
CDY36892	Canola	cytosol	25.67	80.0
CDY05185	Canola	cytosol	25.67	80.0
KRG96775	Soybean	mitochondrion, nucleus	95.72	79.2
CDY25018	Canola	cytosol	83.42	79.19
CDY66803	Canola	cytosol	83.96	78.5
GSMUA_Achr2P01730_001	Banana	cytosol	83.96	78.11
AT2G47570.1	Thale cress	cytosol, nucleus	77.54	77.96
Os07t0674700-01	Rice	plasma membrane	80.75	77.44
CDX99969	Canola	cytosol, plastid	84.49	75.24
CDX74138	Canola	extracellular	85.03	74.65
CDY19736	Canola	cytosol	84.49	73.49
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	81.28	70.05
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	84.49	69.6
HORVU2Hr1G018840.4	Barley	cytosol	33.69	69.23
CDY05183	Canola	mitochondrion	81.28	68.16
CDX80616	Canola	cytosol	83.42	67.24
Zm00001d037603_P002	Maize	cytosol	81.82	66.52
CDY18813	Canola	cytosol, mitochondrion	85.03	63.86
GSMUA_Achr8P10280_001	Banana	cytosol	84.49	63.71
Bra040533.1-P	Field mustard	nucleus	83.42	60.23
CDY46988	Canola	cytosol	17.65	39.76
Bra039423.1-P	Field mustard	cytosol	23.53	37.29
CDY27753	Canola	cytosol, mitochondrion	23.53	37.29

Protein Annotations

EntrezGene:100791657	MapMan:17.1.2.1.18	Gene3D:3.100.10.10	EMBL:ACUP02012770	EnsemblPlantsGene:GLYMA_20G237400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
UniProt:I1NJ30	EnsemblPlants:KRG92914	ProteinID:KRG92914	ProteinID:KRG92914.1	InterPro:L18e/L15P_sf	PFAM:PF17135
PANTHER:PTHR10934	PANTHER:PTHR10934:SF9	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI000233DDD0
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:46930715..46933379

Molecular Weight (calculated)

20967.0 Da

IEP (calculated)

11.764

GRAVY (calculated)

-0.455

Length

187 amino acids

Sequence
(BLAST)

001: MGIDLKAGGK SKKTKRTAPK SNDIYLKLLV KLYRFLVRRT GSNFNAVILK RLFMSKVNKP PLSLSRLIKY TKGKEDKIAV VVGSITDDIR VYEVPPLKVT
101: ALRFTETARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNAREAVKH FGPAPGVPHS HTKPYVRAKG RKFERARGRR NSRGFRV

Best Arabidopsis Sequence Match ( AT5G27850.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRS NSNFNAVILK RLFMSKVNKA PLSLSRLVEF MTGKDDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18C60S ribosomal protein L18-3 [Source:UniProtKB/Swiss-Prot;Acc:Q940B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.