CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	EES09373	AT1G35670.1	19130088
AT5G27850.1	EES16732	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022462_P001	Maize	plastid	97.86	97.86
OQU92626	Sorghum	cytosol	95.72	95.72
EES17748	Sorghum	cytosol	94.12	93.62
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	44.92	92.31
TraesCS2D01G110100.1	Wheat	golgi, unclear	91.98	91.98
TraesCS2B01G127900.1	Wheat	cytosol	91.98	91.98
TraesCS2A01G109900.1	Wheat	plastid	91.98	91.98
HORVU2Hr1G018820.1	Barley	cytosol	91.44	91.44
Os07t0674700-01	Rice	plasma membrane	94.65	90.77
CDY36892	Canola	cytosol	27.81	86.67
CDY05185	Canola	cytosol	27.81	86.67
GSMUA_Achr5P27080_001	Banana	cytosol	62.03	86.57
VIT_14s0060g01930.t01	Wine grape	cytosol	85.03	85.03
AT5G27850.1	Thale cress	nucleus	84.49	84.49
GSMUA_Achr11P...	Banana	cytosol	60.43	84.33
KRG96455	Soybean	nucleus	83.96	83.96
Bra001156.1-P	Field mustard	nucleus	83.96	83.96
KRH33871	Soybean	nucleus	83.42	83.42
KRG92914	Soybean	nucleus	83.42	83.42
KRH68205	Soybean	nucleus	83.42	83.42
PGSC0003DMT400081310	Potato	nucleus	83.42	83.42
AT3G05590.1	Thale cress	nucleus	83.42	83.42
KRH68491	Soybean	nucleus	82.89	82.89
Bra009940.1-P	Field mustard	cytosol	82.35	82.35
Bra036611.1-P	Field mustard	cytosol	82.35	82.35
Solyc09g075290.2.1	Tomato	nucleus	82.35	82.35
HORVU2Hr1G018840.4	Barley	cytosol	39.57	81.32
PGSC0003DMT400063593	Potato	cytosol	81.28	81.28
GSMUA_Achr2P01730_001	Banana	cytosol	87.17	81.09
Solyc01g099900.2.1	Tomato	nucleus	80.75	80.75
CDY25018	Canola	cytosol	81.82	77.67
CDY66803	Canola	cytosol	82.35	77.0
AT2G47570.1	Thale cress	cytosol, nucleus	76.47	76.88
VIT_05s0077g02070.t01	Wine grape	cytosol	60.43	76.87
VIT_05s0077g02060.t01	Wine grape	mitochondrion	27.81	76.47
CDX74138	Canola	extracellular	83.96	73.71
CDX99969	Canola	cytosol, plastid	82.35	73.33
CDY19736	Canola	cytosol	82.35	71.63
VIT_07s0005g00690.t01	Wine grape	plastid	83.96	69.78
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	83.42	68.72
KRG96775	Soybean	mitochondrion, nucleus	82.89	68.58
CDY05183	Canola	mitochondrion	80.21	67.26
CDX80616	Canola	cytosol	82.35	66.38
GSMUA_Achr8P10280_001	Banana	cytosol	85.56	64.52
CDY18813	Canola	cytosol, mitochondrion	83.96	63.05
Bra040533.1-P	Field mustard	nucleus	82.35	59.46
VIT_14s0036g01220.t01	Wine grape	cytosol	37.43	58.82
Solyc09g025200.1.1	Tomato	extracellular	20.32	52.78
CDY46988	Canola	cytosol	17.11	38.55
Bra039423.1-P	Field mustard	cytosol	22.99	36.44
CDY27753	Canola	cytosol, mitochondrion	22.99	36.44

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	EntrezGene:8078545	UniProt:C5X5J2	EnsemblPlants:EER97722	ProteinID:EER97722
ProteinID:EER97722.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	InterPro:L18e/L15P_sf	PFAM:PF17135	ScanProsite:PS01106	PANTHER:PTHR10934
PANTHER:PTHR10934:SF3	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	InterPro:Ribosomal_L18e_CS	EnsemblPlantsGene:SORBI_3002G415500	SUPFAM:SSF52080
unigene:Sbi.6561	UniParc:UPI0001A835D0	RefSeq:XP_002461201.1	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:76267651..76271420

Molecular Weight (calculated)

21045.1 Da

IEP (calculated)

11.909

GRAVY (calculated)

-0.448

Length

187 amino acids

Sequence
(BLAST)

001: MGIDLVAGGR NKKTKRTAPK SDDVYLKLLV KLYRFLVRRT KSNFNAVILK RLFMSKTNRP PLSMRRLVKF MEGKSDQIAV IVGTVTDDKR INEVPAMKVC
101: ALRFTETARA RIINAGGECL TFDQLALRAP LGQNTVLLRG PKNAREAVKH FGPAPGVPHS HTKPYVRSKG RKFEKARGRR NSRGFKV

Best Arabidopsis Sequence Match ( AT5G27850.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRS NSNFNAVILK RLFMSKVNKA PLSLSRLVEF MTGKDDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18C60S ribosomal protein L18-3 [Source:UniProtKB/Swiss-Prot;Acc:Q940B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.