CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	KRG91803	AT1G35670.1	19130088
AT5G27850.1	KRH34983	AT1G35670.1	19130088
AT5G27850.1	KRH34984	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68205	Soybean	nucleus	95.19	95.19
KRH33871	Soybean	nucleus	95.19	95.19
KRG92914	Soybean	nucleus	95.19	95.19
KRG96455	Soybean	nucleus	94.65	94.65
VIT_14s0060g01930.t01	Wine grape	cytosol	90.91	90.91
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	43.32	89.01
PGSC0003DMT400063593	Potato	cytosol	86.1	86.1
GSMUA_Achr5P27080_001	Banana	cytosol	61.5	85.82
Solyc01g099900.2.1	Tomato	nucleus	85.56	85.56
GSMUA_Achr11P...	Banana	cytosol	60.96	85.07
AT3G05590.1	Thale cress	nucleus	83.96	83.96
OQU92626	Sorghum	cytosol	83.96	83.96
AT5G27850.1	Thale cress	nucleus	83.96	83.96
Bra001156.1-P	Field mustard	nucleus	83.96	83.96
Bra009940.1-P	Field mustard	cytosol	83.42	83.42
Bra036611.1-P	Field mustard	cytosol	83.42	83.42
EES17748	Sorghum	cytosol	83.42	82.98
EER97722	Sorghum	cytosol	82.89	82.89
Zm00001d009848_P001	Maize	cytosol	82.35	82.35
Zm00001d022462_P001	Maize	plastid	81.82	81.82
KRG96775	Soybean	mitochondrion, nucleus	98.4	81.42
TraesCS2A01G109900.1	Wheat	plastid	80.75	80.75
Os03t0341100-01	Rice	nucleus	80.75	80.75
TraesCS4D01G169400.1	Wheat	cytosol, unclear	80.75	80.75
Os05t0155100-01	Rice	nucleus	80.75	80.32
TraesCS4B01G166800.1	Wheat	cytosol	80.21	80.21
HORVU2Hr1G018820.1	Barley	cytosol	80.21	80.21
TraesCS2D01G110100.1	Wheat	golgi, unclear	80.21	80.21
TraesCS2B01G127900.1	Wheat	cytosol	80.21	80.21
CDY05185	Canola	cytosol	25.67	80.0
CDY36892	Canola	cytosol	25.67	80.0
TraesCS1D01G105500.2	Wheat	golgi	79.14	78.72
TraesCS1B01G127200.1	Wheat	cytosol	78.61	78.61
TraesCS1A01G096500.2	Wheat	cytosol	78.61	78.61
GSMUA_Achr2P01730_001	Banana	cytosol	84.49	78.61
CDY25018	Canola	cytosol	82.35	78.17
AT2G47570.1	Thale cress	cytosol, nucleus	77.54	77.96
CDY66803	Canola	cytosol	82.89	77.5
Os07t0674700-01	Rice	plasma membrane	80.21	76.92
CDX99969	Canola	cytosol, plastid	83.42	74.29
CDX74138	Canola	extracellular	83.96	73.71
CDY19736	Canola	cytosol	83.42	72.56
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	83.42	68.72
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	78.61	67.74
CDY05183	Canola	mitochondrion	80.21	67.26
HORVU2Hr1G018840.4	Barley	cytosol	32.62	67.03
Zm00001d037603_P002	Maize	cytosol	82.35	66.96
CDX80616	Canola	cytosol	82.35	66.38
GSMUA_Achr8P10280_001	Banana	cytosol	85.03	64.11
CDY18813	Canola	cytosol, mitochondrion	83.96	63.05
Bra040533.1-P	Field mustard	nucleus	82.35	59.46
CDY46988	Canola	cytosol	16.58	37.35
Bra039423.1-P	Field mustard	cytosol	23.53	37.29
CDY27753	Canola	cytosol, mitochondrion	23.53	37.29

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	EMBL:ACUP02002118	EnsemblPlantsGene:GLYMA_03G234600	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	UniProt:I1JR90
EnsemblPlants:KRH68491	ProteinID:KRH68491	ProteinID:KRH68491.1	InterPro:L18e/L15P_sf	PFAM:PF17135	PANTHER:PTHR10934
PANTHER:PTHR10934:SF9	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI00023C1C9D	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:43498788..43500975

Molecular Weight (calculated)

20997.1 Da

IEP (calculated)

11.684

GRAVY (calculated)

-0.448

Length

187 amino acids

Sequence
(BLAST)

001: MGIDLKAGGK SKKTKRTAPK SNDIYLKLLV KLYRFLVRRT GSNFNAVILK RLFMSKVNKP PISLSRLIKY TKGKEDKIAV IVGTVTDDIR VYEVPALKIT
101: ALKFTERARA RIEKAGGECL TFDELALRAP LGQNTVLLRG PKNAREAVKH FGPAPGVPHS HTKPYVRAKG RKFERARGRR NSRGFRV

Best Arabidopsis Sequence Match ( AT3G05590.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.