Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G018840.4 | Barley | cytosol | 40.96 | 37.36 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 42.17 | 29.41 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 38.55 | 21.77 |
| CDY66803 | Canola | cytosol | 46.99 | 19.5 |
| CDY27753 | Canola | cytosol, mitochondrion | 27.71 | 19.49 |
| CDY25018 | Canola | cytosol | 45.78 | 19.29 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 43.37 | 19.25 |
| CDX99969 | Canola | cytosol, plastid | 46.99 | 18.57 |
| PGSC0003DMT400063593 | Potato | cytosol | 40.96 | 18.18 |
| KRH33871 | Soybean | nucleus | 40.96 | 18.18 |
| PGSC0003DMT400081310 | Potato | nucleus | 40.96 | 18.18 |
| CDY19736 | Canola | cytosol | 46.99 | 18.14 |
| KRH68205 | Soybean | nucleus | 39.76 | 17.65 |
| KRG96455 | Soybean | nucleus | 39.76 | 17.65 |
| KRG92914 | Soybean | nucleus | 39.76 | 17.65 |
| CDX74138 | Canola | extracellular | 44.58 | 17.37 |
| OQU92626 | Sorghum | cytosol | 38.55 | 17.11 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 38.55 | 17.11 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 38.55 | 17.11 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 38.55 | 17.11 |
| TraesCS2A01G109900.1 | Wheat | plastid | 38.55 | 17.11 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 38.55 | 17.11 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 38.55 | 17.11 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 38.55 | 17.11 |
| EER97722 | Sorghum | cytosol | 38.55 | 17.11 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 38.55 | 17.11 |
| Zm00001d022462_P001 | Maize | plastid | 38.55 | 17.11 |
| TraesCS1D01G105500.2 | Wheat | golgi | 38.55 | 17.02 |
| CDX80616 | Canola | cytosol | 46.99 | 16.81 |
| KRH68491 | Soybean | nucleus | 37.35 | 16.58 |
| Os03t0341100-01 | Rice | nucleus | 37.35 | 16.58 |
| Zm00001d009848_P001 | Maize | cytosol | 37.35 | 16.58 |
| EES17748 | Sorghum | cytosol | 37.35 | 16.49 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 44.58 | 16.3 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 43.37 | 16.0 |
| Os05t0155100-01 | Rice | nucleus | 36.14 | 15.96 |
| Os07t0674700-01 | Rice | plasma membrane | 36.14 | 15.38 |
| CDY18813 | Canola | cytosol, mitochondrion | 44.58 | 14.86 |
| CDY05183 | Canola | mitochondrion | 39.76 | 14.8 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 38.55 | 14.75 |
| KRG96775 | Soybean | mitochondrion, nucleus | 39.76 | 14.6 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 34.94 | 14.43 |
| Zm00001d037603_P002 | Maize | cytosol | 38.55 | 13.91 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 36.14 | 12.1 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 3.61 | 4.41 |
| GSMUA_Achr11P... | Banana | cytosol | 6.02 | 3.73 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 6.02 | 3.73 |
| CDY36892 | Canola | cytosol | 2.41 | 3.33 |
| CDY05185 | Canola | cytosol | 2.41 | 3.33 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.100.10.10 | MapMan:35.2 | UniProt:A0A078ICN0 | EnsemblPlants:CDY46988 | ProteinID:CDY46988 | ProteinID:CDY46988.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00086485001 | PFAM:PF17135 | PANTHER:PTHR10934 | PANTHER:PTHR10934:SF9 |
| InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | UniParc:UPI0004EDD6C7 | : | : | : |
Description
BnaC09g14160DBnaC09g14160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICN0]
Coordinates
chrLK032693:-:110254..111329
Molecular Weight (calculated)
9798.0 Da
IEP (calculated)
10.520
GRAVY (calculated)
-0.458
Length
83 amino acids
Sequence
(BLAST)
(BLAST)
1: MDGRHVFHKR KEQEDQKTAS KFDDVYLKIS VKVILWDIQM VRRTDSKFDV VIFKRIFMSK VNKAPLTCAK MVSGYQSRYP SVP
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.