Factsheet for HORVU1Hr1G022570.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G019530.1
HORVU5Hr1G032550.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	HORVU4Hr1G019530.1	AT1G35670.1	19130088
AT5G27850.1	HORVU5Hr1G032550.3	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G105500.2	Wheat	golgi	85.71	98.94
TraesCS1B01G127200.1	Wheat	cytosol	84.79	98.4
TraesCS1A01G096500.2	Wheat	cytosol	84.79	98.4
EES17748	Sorghum	cytosol	79.72	92.02
Os05t0155100-01	Rice	nucleus	79.26	91.49
Zm00001d009848_P001	Maize	cytosol	78.8	91.44
HORVU2Hr1G018820.1	Barley	cytosol	78.8	91.44
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	37.33	89.01
VIT_14s0060g01930.t01	Wine grape	cytosol	72.35	83.96
KRH33871	Soybean	nucleus	70.97	82.35
Bra001156.1-P	Field mustard	nucleus	70.51	81.82
Bra036611.1-P	Field mustard	cytosol	70.51	81.82
GSMUA_Achr5P27080_001	Banana	cytosol	50.23	81.34
GSMUA_Achr11P...	Banana	cytosol	50.23	81.34
HORVU2Hr1G018840.4	Barley	cytosol	34.1	81.32
KRG96455	Soybean	nucleus	70.05	81.28
KRG92914	Soybean	nucleus	70.05	81.28
AT3G05590.1	Thale cress	nucleus	70.05	81.28
Solyc09g075290.2.1	Tomato	nucleus	69.59	80.75
PGSC0003DMT400081310	Potato	nucleus	69.59	80.75
KRH68205	Soybean	nucleus	69.59	80.75
Bra009940.1-P	Field mustard	cytosol	69.59	80.75
AT5G27850.1	Thale cress	nucleus	69.59	80.75
CDY36892	Canola	cytosol	22.12	80.0
CDY05185	Canola	cytosol	22.12	80.0
KRH68491	Soybean	nucleus	67.74	78.61
CDY25018	Canola	cytosol	70.51	77.67
GSMUA_Achr2P01730_001	Banana	cytosol	71.43	77.11
PGSC0003DMT400063593	Potato	cytosol	66.36	77.01
Solyc01g099900.2.1	Tomato	nucleus	65.9	76.47
VIT_05s0077g02060.t01	Wine grape	mitochondrion	23.96	76.47
CDY66803	Canola	cytosol	69.59	75.5
AT2G47570.1	Thale cress	cytosol, nucleus	64.52	75.27
VIT_05s0077g02070.t01	Wine grape	cytosol	50.69	74.83
Zm00001d037603_P002	Maize	cytosol	78.8	74.35
CDX99969	Canola	cytosol, plastid	71.43	73.81
CDX74138	Canola	extracellular	71.43	72.77
CDY19736	Canola	cytosol	70.97	71.63
VIT_07s0005g00690.t01	Wine grape	plastid	72.81	70.22
KRG96775	Soybean	mitochondrion, nucleus	71.43	68.58
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	70.97	67.84
CDY05183	Canola	mitochondrion	68.2	66.37
CDX80616	Canola	cytosol	70.51	65.95
GSMUA_Achr8P10280_001	Banana	cytosol	71.89	62.9
CDY18813	Canola	cytosol, mitochondrion	71.89	62.65
Bra040533.1-P	Field mustard	nucleus	70.05	58.69
VIT_14s0036g01220.t01	Wine grape	cytosol	31.8	57.98
Solyc09g025200.1.1	Tomato	extracellular	16.13	48.61
CDY27753	Canola	cytosol, mitochondrion	21.2	38.98
Bra039423.1-P	Field mustard	cytosol	21.2	38.98
CDY46988	Canola	cytosol	14.75	38.55

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	UniProt:A0A287EWL1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU1Hr1G022570
EnsemblPlants:HORVU1Hr1G022570.1	InterPro:L18e/L15P_sf	PFAM:PF17135	ScanProsite:PS01106	PANTHER:PTHR10934	PANTHER:PTHR10934:SF5
InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	InterPro:Ribosomal_L18e_CS	SUPFAM:SSF52080	UniParc:UPI000B464C92	:

Description

No Description!

Coordinates

chrchr1H:-:96478835..96482565

Molecular Weight (calculated)

24183.6 Da

IEP (calculated)

11.831

GRAVY (calculated)

-0.568

Length

217 amino acids

Sequence
(BLAST)

001: PEPEADEVRS SSRSATPRGN PTAAAAEAAM GIDLVAGGRN KRTKRVAPKS DDVYLKLLVK LYRFLVRRTK SKFNAVILKR LFMSKTNRPP LSMRRLSNFM
101: KGKEEKNIAV VVGTITDDMR IQEIPAMKVT ALRFTETARA RIVNAGGECL TFDQLALRAP TGENTILLRG PKNAREAVRH FGKAPGVPHS HTKPYVRSKG
201: RKFEKARGRR NSRGFKV

Best Arabidopsis Sequence Match ( AT3G05590.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.