CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001156.1-P	Field mustard	nucleus	75.1	100.0
AT3G05590.1	Thale cress	nucleus	73.49	97.86
CDY05185	Canola	cytosol	22.49	93.33
CDY36892	Canola	cytosol	22.49	93.33
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	32.93	90.11
CDY25018	Canola	cytosol	70.68	89.34
CDX74138	Canola	extracellular	76.31	89.2
CDY66803	Canola	cytosol	71.08	88.5
VIT_14s0060g01930.t01	Wine grape	cytosol	65.86	87.7
PGSC0003DMT400081310	Potato	nucleus	65.46	87.17
KRH33871	Soybean	nucleus	64.66	86.1
KRH68205	Soybean	nucleus	64.26	85.56
OQU92626	Sorghum	cytosol	63.86	85.03
KRG96455	Soybean	nucleus	63.86	85.03
KRG92914	Soybean	nucleus	63.86	85.03
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	77.11	84.58
TraesCS2A01G109900.1	Wheat	plastid	63.45	84.49
VIT_05s0077g02070.t01	Wine grape	cytosol	49.8	84.35
TraesCS2D01G110100.1	Wheat	golgi, unclear	63.05	83.96
TraesCS2B01G127900.1	Wheat	cytosol	63.05	83.96
HORVU2Hr1G018820.1	Barley	cytosol	63.05	83.96
EER97722	Sorghum	cytosol	63.05	83.96
KRH68491	Soybean	nucleus	63.05	83.96
CDX99969	Canola	cytosol, plastid	70.68	83.81
TraesCS4D01G169400.1	Wheat	cytosol, unclear	62.65	83.42
TraesCS4B01G166800.1	Wheat	cytosol	62.65	83.42
Zm00001d022462_P001	Maize	plastid	62.65	83.42
EES17748	Sorghum	cytosol	62.65	82.98
Os03t0341100-01	Rice	nucleus	62.25	82.89
PGSC0003DMT400063593	Potato	cytosol	62.25	82.89
Zm00001d009848_P001	Maize	cytosol	61.85	82.35
Os05t0155100-01	Rice	nucleus	61.85	81.91
CDY19736	Canola	cytosol	70.28	81.4
GSMUA_Achr5P27080_001	Banana	cytosol	43.78	81.34
TraesCS1D01G105500.2	Wheat	golgi	61.04	80.85
TraesCS1A01G096500.2	Wheat	cytosol	60.64	80.75
TraesCS1B01G127200.1	Wheat	cytosol	60.64	80.75
CDY05183	Canola	mitochondrion	71.89	80.27
GSMUA_Achr11P...	Banana	cytosol	42.97	79.85
Os07t0674700-01	Rice	plasma membrane	61.45	78.46
CDX80616	Canola	cytosol	71.49	76.72
GSMUA_Achr2P01730_001	Banana	cytosol	61.85	76.62
VIT_07s0005g00690.t01	Wine grape	plastid	66.67	73.78
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	62.65	71.89
KRG96775	Soybean	mitochondrion, nucleus	65.06	71.68
HORVU2Hr1G018840.4	Barley	cytosol	26.1	71.43
VIT_05s0077g02060.t01	Wine grape	mitochondrion	19.28	70.59
VIT_14s0036g01220.t01	Wine grape	cytosol	32.53	68.07
Zm00001d037603_P002	Maize	cytosol	61.85	66.96
GSMUA_Achr8P10280_001	Banana	cytosol	61.85	62.1
CDY27753	Canola	cytosol, mitochondrion	22.09	46.61
CDY46988	Canola	cytosol	14.86	44.58

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	GO:A0A078G2C7	UniProt:A0A078G2C7	EnsemblPlants:CDY18813	ProteinID:CDY18813
ProteinID:CDY18813.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00005980001	InterPro:L18e/L15P_sf	PFAM:PF17135
PANTHER:PTHR10934	PANTHER:PTHR10934:SF9	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI0004EEF758
SEG:seg	:	:	:	:	:

Description

BnaAnng02780DBnaAnng02780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2C7]

Coordinates

chrLK032089:-:311170..313001

Molecular Weight (calculated)

28483.4 Da

IEP (calculated)

11.848

GRAVY (calculated)

-0.386

Length

249 amino acids

Sequence
(BLAST)

001: MLFYSCKTRE IVNELRQARL TKVLLFLFKF FSLGRFHRQR GGLSLELNLR PRRHHHIPRE AIMGIDLIAG GKSKKTKRTA PKSDDVYLKL TVKLYRFLVR
101: RTQSKFNAVI LKRLFMSKVN KAPLSLSRLV EFMTGKEDKI AVLVGTITDD LRVHEIPAIK VTALRFTERA RARIEKAGGE CLTFDQLALR APLGQNTVLL
201: RGPKNSREAV KHFGPAPGVP HSHSKPYVRS KGRKFEKARG KRKSRGFKV

Best Arabidopsis Sequence Match ( AT3G05590.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.