Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22160430
nucleus: 28628250 |
msms PMID:
22160430
doi
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
msms PMID:
28628250
doi
LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 99.47 | 99.47 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 99.47 | 99.47 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 98.93 | 98.93 |
| Zm00001d022462_P001 | Maize | plastid | 93.05 | 93.05 |
| EER97722 | Sorghum | cytosol | 91.98 | 91.98 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 44.38 | 91.21 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 90.91 | 90.91 |
| Os07t0674700-01 | Rice | plasma membrane | 90.91 | 87.18 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 61.5 | 85.82 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 41.71 | 85.71 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 85.56 | 85.56 |
| GSMUA_Achr11P... | Banana | cytosol | 60.96 | 85.07 |
| Bra001156.1-P | Field mustard | nucleus | 84.49 | 84.49 |
| AT3G05590.1 | Thale cress | nucleus | 83.96 | 83.96 |
| AT5G27850.1 | Thale cress | nucleus | 83.96 | 83.96 |
| Bra036611.1-P | Field mustard | cytosol | 83.42 | 83.42 |
| KRG96455 | Soybean | nucleus | 82.89 | 82.89 |
| KRH33871 | Soybean | nucleus | 82.89 | 82.89 |
| Bra009940.1-P | Field mustard | cytosol | 82.35 | 82.35 |
| PGSC0003DMT400081310 | Potato | nucleus | 82.35 | 82.35 |
| KRH68205 | Soybean | nucleus | 82.35 | 82.35 |
| KRG92914 | Soybean | nucleus | 82.35 | 82.35 |
| CDY36892 | Canola | cytosol | 26.2 | 81.67 |
| CDY05185 | Canola | cytosol | 26.2 | 81.67 |
| Solyc09g075290.2.1 | Tomato | nucleus | 81.28 | 81.28 |
| KRH68491 | Soybean | nucleus | 80.75 | 80.75 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 86.1 | 80.1 |
| PGSC0003DMT400063593 | Potato | cytosol | 79.68 | 79.68 |
| Solyc01g099900.2.1 | Tomato | nucleus | 79.14 | 79.14 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 61.5 | 78.23 |
| CDY25018 | Canola | cytosol | 82.35 | 78.17 |
| CDY66803 | Canola | cytosol | 82.35 | 77.0 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 27.27 | 75.0 |
| CDX99969 | Canola | cytosol, plastid | 83.42 | 74.29 |
| AT2G47570.1 | Thale cress | cytosol, nucleus | 73.8 | 74.19 |
| CDX74138 | Canola | extracellular | 84.49 | 74.18 |
| CDY19736 | Canola | cytosol | 83.42 | 72.56 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 85.56 | 71.11 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 84.49 | 69.6 |
| CDY05183 | Canola | mitochondrion | 80.75 | 67.71 |
| KRG96775 | Soybean | mitochondrion, nucleus | 80.75 | 66.81 |
| CDX80616 | Canola | cytosol | 82.89 | 66.81 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 84.49 | 63.71 |
| CDY18813 | Canola | cytosol, mitochondrion | 84.49 | 63.45 |
| Bra040533.1-P | Field mustard | nucleus | 82.89 | 59.85 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 37.97 | 59.66 |
| Solyc09g025200.1.1 | Tomato | extracellular | 19.79 | 51.39 |
| CDY46988 | Canola | cytosol | 17.11 | 38.55 |
| Bra039423.1-P | Field mustard | cytosol | 22.46 | 35.59 |
| CDY27753 | Canola | cytosol, mitochondrion | 22.46 | 35.59 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:L18e/L15P_sf | PFAM:PF17135 |
| ScanProsite:PS01106 | PANTHER:PTHR10934 | PANTHER:PTHR10934:SF5 | InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | InterPro:Ribosomal_L18e_CS |
| SUPFAM:SSF52080 | EnsemblPlantsGene:TraesCS2A01G109900 | EnsemblPlants:TraesCS2A01G109900.1 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:61489238..61491122
Molecular Weight (calculated)
21247.4 Da
IEP (calculated)
12.009
GRAVY (calculated)
-0.478
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIDLVAGGR NKRTKRTAPK SDDVYLKLLV KLYRFLVRRT KSQFNAVILK RLFMSKTNRP PLSMRRLVRF MEGKEDKIAV IVGTITDDQR VYEIPAMKVA
101: ALRFTETARA RIVNAGGECL TFDQLALRAP LGQNTLLLRG PKNAREAVRH FGKAPGVPHS HTKPYVRSKG RKFEKARGRR NSRGFKV
101: ALRFTETARA RIVNAGGECL TFDQLALRAP LGQNTLLLRG PKNAREAVRH FGKAPGVPHS HTKPYVRSKG RKFEKARGRR NSRGFKV
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.