Factsheet for GSMUA_Achr8P10280_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 5
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	GSMUA_Achr10P...	AT1G35670.1	19130088
AT5G27850.1	GSMUA_Achr2P08110_001	AT1G35670.1	19130088
AT5G27850.1	GSMUA_Achr6P25560_001	AT1G35670.1	19130088
AT5G27850.1	GSMUA_Achr9P08680_001	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	52.82	97.76
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	35.48	96.7
GSMUA_Achr5P27080_001	Banana	cytosol	52.02	96.27
GSMUA_Achr2P01730_001	Banana	cytosol	72.58	89.55
VIT_14s0060g01930.t01	Wine grape	cytosol	66.53	88.24
OQU92626	Sorghum	cytosol	66.13	87.7
EES17748	Sorghum	cytosol	65.73	86.7
TraesCS4D01G169400.1	Wheat	cytosol, unclear	65.32	86.63
TraesCS4B01G166800.1	Wheat	cytosol	64.92	86.1
Zm00001d009848_P001	Maize	cytosol	64.92	86.1
Os03t0341100-01	Rice	nucleus	64.92	86.1
EER97722	Sorghum	cytosol	64.52	85.56
KRG96455	Soybean	nucleus	64.52	85.56
KRH33871	Soybean	nucleus	64.52	85.56
Os05t0155100-01	Rice	nucleus	64.52	85.11
KRH68205	Soybean	nucleus	64.11	85.03
KRH68491	Soybean	nucleus	64.11	85.03
Zm00001d022462_P001	Maize	plastid	64.11	85.03
KRG92914	Soybean	nucleus	63.71	84.49
TraesCS2B01G127900.1	Wheat	cytosol	63.71	84.49
HORVU2Hr1G018820.1	Barley	cytosol	63.71	84.49
TraesCS2D01G110100.1	Wheat	golgi, unclear	63.71	84.49
PGSC0003DMT400081310	Potato	nucleus	63.71	84.49
TraesCS2A01G109900.1	Wheat	plastid	63.71	84.49
Solyc09g075290.2.1	Tomato	nucleus	62.9	83.42
Bra036611.1-P	Field mustard	cytosol	62.1	82.35
AT5G27850.1	Thale cress	nucleus	62.1	82.35
Os07t0674700-01	Rice	plasma membrane	64.52	82.05
TraesCS1D01G105500.2	Wheat	golgi	62.1	81.91
TraesCS1B01G127200.1	Wheat	cytosol	61.69	81.82
TraesCS1A01G096500.2	Wheat	cytosol	61.69	81.82
Bra001156.1-P	Field mustard	nucleus	61.69	81.82
VIT_05s0077g02070.t01	Wine grape	cytosol	48.39	81.63
PGSC0003DMT400063593	Potato	cytosol	61.29	81.28
Bra009940.1-P	Field mustard	cytosol	61.29	81.28
AT3G05590.1	Thale cress	nucleus	60.89	80.75
Solyc01g099900.2.1	Tomato	nucleus	60.89	80.75
CDY36892	Canola	cytosol	19.35	80.0
CDY05185	Canola	cytosol	19.35	80.0
VIT_05s0077g02060.t01	Wine grape	mitochondrion	21.77	79.41
CDY25018	Canola	cytosol	62.5	78.68
CDY66803	Canola	cytosol	62.1	77.0
AT2G47570.1	Thale cress	cytosol, nucleus	56.85	75.81
CDX99969	Canola	cytosol, plastid	63.71	75.24
VIT_07s0005g00690.t01	Wine grape	plastid	67.34	74.22
CDY19736	Canola	cytosol	63.31	73.02
CDX74138	Canola	extracellular	62.5	72.77
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	62.9	71.89
KRG96775	Soybean	mitochondrion, nucleus	64.92	71.24
Zm00001d037603_P002	Maize	cytosol	64.92	70.0
HORVU2Hr1G018840.4	Barley	cytosol	25.4	69.23
GSMUA_Achr11P...	Banana	endoplasmic reticulum	10.89	69.23
CDX80616	Canola	cytosol	63.71	68.1
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	62.1	67.84
GSMUA_Achr11P...	Banana	endoplasmic reticulum	18.55	67.65
CDY05183	Canola	mitochondrion	59.27	65.92
CDY18813	Canola	cytosol, mitochondrion	62.1	61.85
VIT_14s0036g01220.t01	Wine grape	cytosol	29.44	61.34
Bra040533.1-P	Field mustard	nucleus	61.29	58.69
Solyc09g025200.1.1	Tomato	extracellular	15.73	54.17
CDY27753	Canola	cytosol, mitochondrion	18.15	38.14
Bra039423.1-P	Field mustard	cytosol	18.15	38.14
CDY46988	Canola	cytosol	12.1	36.14

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr8G10280_001	EnsemblPlants:GSMUA_Achr8P10280_001
EnsemblPlants:GSMUA_Achr8T10280_001	InterPro:L18e/L15P_sf	UniProt:M0TP81	PFAM:PF17135	ScanProsite:PS01106	PANTHER:PTHR10934
PANTHER:PTHR10934:SF5	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	InterPro:Ribosomal_L18e_CS	SUPFAM:SSF52080	UniParc:UPI000295A7BD
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L18-3 [Source:GMGC_GENE;Acc:GSMUA_Achr8G10280_001]

Coordinates

chr8:+:7324453..7328241

Molecular Weight (calculated)

27811.2 Da

IEP (calculated)

11.514

GRAVY (calculated)

-0.342

Length

248 amino acids

Sequence
(BLAST)

001: MSNFSFLALP LEGKEICQTS VCVSILVLYK YPRSISTLWE SEHQNPRTEA PLGGAEEQRG AMGIDIVAGG RSKKARRTAP RSDDVYLKLL VKLYRFLVRR
101: TGSKFNAVIL KRLFMSKINR PPISLKRLIT FMNGKDNKIA VIVGTVTDDK RVYEVPALKV TALRFTETAR ARILKAGGEC LTFDQLALRA PLGQNTVLLR
201: GPKNAREAVK HFGKAPGVPH SNTKPYVRSK GRKFERARGR RNSRGFRV

Best Arabidopsis Sequence Match ( AT5G27850.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRS NSNFNAVILK RLFMSKVNKA PLSLSRLVEF MTGKDDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18C60S ribosomal protein L18-3 [Source:UniProtKB/Swiss-Prot;Acc:Q940B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.