Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY36892 | Canola | cytosol | 50.55 | 76.67 |
CDY05185 | Canola | cytosol | 50.55 | 76.67 |
VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 57.14 | 76.47 |
GSMUA_Achr11P... | Banana | endoplasmic reticulum | 50.55 | 67.65 |
GSMUA_Achr5P27080_001 | Banana | cytosol | 97.8 | 66.42 |
GSMUA_Achr11P... | Banana | cytosol | 95.6 | 64.93 |
VIT_14s0060g01930.t01 | Wine grape | cytosol | 94.51 | 45.99 |
KRH33871 | Soybean | nucleus | 93.41 | 45.45 |
KRG96455 | Soybean | nucleus | 93.41 | 45.45 |
KRG92914 | Soybean | nucleus | 93.41 | 45.45 |
Zm00001d009848_P001 | Maize | cytosol | 92.31 | 44.92 |
KRH68205 | Soybean | nucleus | 92.31 | 44.92 |
EER97722 | Sorghum | cytosol | 92.31 | 44.92 |
OQU92626 | Sorghum | cytosol | 92.31 | 44.92 |
GSMUA_Achr2P01730_001 | Banana | cytosol | 98.9 | 44.78 |
EES17748 | Sorghum | cytosol | 92.31 | 44.68 |
Os05t0155100-01 | Rice | nucleus | 92.31 | 44.68 |
TraesCS2D01G110100.1 | Wheat | golgi, unclear | 91.21 | 44.38 |
TraesCS2A01G109900.1 | Wheat | plastid | 91.21 | 44.38 |
TraesCS4B01G166800.1 | Wheat | cytosol | 91.21 | 44.38 |
TraesCS2B01G127900.1 | Wheat | cytosol | 91.21 | 44.38 |
HORVU2Hr1G018820.1 | Barley | cytosol | 91.21 | 44.38 |
Zm00001d022462_P001 | Maize | plastid | 91.21 | 44.38 |
Bra036611.1-P | Field mustard | cytosol | 91.21 | 44.38 |
AT3G05590.1 | Thale cress | nucleus | 90.11 | 43.85 |
PGSC0003DMT400081310 | Potato | nucleus | 90.11 | 43.85 |
TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 90.11 | 43.85 |
AT5G27850.1 | Thale cress | nucleus | 90.11 | 43.85 |
Bra001156.1-P | Field mustard | nucleus | 90.11 | 43.85 |
TraesCS1B01G127200.1 | Wheat | cytosol | 89.01 | 43.32 |
TraesCS1A01G096500.2 | Wheat | cytosol | 89.01 | 43.32 |
Solyc09g075290.2.1 | Tomato | nucleus | 89.01 | 43.32 |
Os03t0341100-01 | Rice | nucleus | 89.01 | 43.32 |
KRH68491 | Soybean | nucleus | 89.01 | 43.32 |
Bra009940.1-P | Field mustard | cytosol | 89.01 | 43.32 |
TraesCS1D01G105500.2 | Wheat | golgi | 89.01 | 43.09 |
PGSC0003DMT400063593 | Potato | cytosol | 86.81 | 42.25 |
Os07t0674700-01 | Rice | plasma membrane | 90.11 | 42.05 |
Solyc01g099900.2.1 | Tomato | nucleus | 85.71 | 41.71 |
CDY25018 | Canola | cytosol | 90.11 | 41.62 |
CDY66803 | Canola | cytosol | 89.01 | 40.5 |
CDX99969 | Canola | cytosol, plastid | 91.21 | 39.52 |
AT2G47570.1 | Thale cress | cytosol, nucleus | 79.12 | 38.71 |
CDY19736 | Canola | cytosol | 91.21 | 38.6 |
CDX74138 | Canola | extracellular | 90.11 | 38.5 |
VIT_07s0005g00690.t01 | Wine grape | plastid | 94.51 | 38.22 |
Solyc09g025200.1.1 | Tomato | extracellular | 29.67 | 37.5 |
HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 89.01 | 37.33 |
Zm00001d037603_P002 | Maize | cytosol | 92.31 | 36.52 |
CDY05183 | Canola | mitochondrion | 89.01 | 36.32 |
KRG96775 | Soybean | mitochondrion, nucleus | 90.11 | 36.28 |
CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 90.11 | 36.12 |
GSMUA_Achr8P10280_001 | Banana | cytosol | 96.7 | 35.48 |
CDX80616 | Canola | cytosol | 90.11 | 35.34 |
CDY18813 | Canola | cytosol, mitochondrion | 90.11 | 32.93 |
Bra040533.1-P | Field mustard | nucleus | 87.91 | 30.89 |
VIT_05s0077g02070.t01 | Wine grape | cytosol | 43.96 | 27.21 |
VIT_14s0036g01220.t01 | Wine grape | cytosol | 12.09 | 9.24 |
HORVU2Hr1G018840.4 | Barley | cytosol | 4.4 | 4.4 |
GSMUA_Achr11P... | Banana | endoplasmic reticulum | 0.0 | 0.0 |
CDY46988 | Canola | cytosol | 0.0 | 0.0 |
CDY27753 | Canola | cytosol, mitochondrion | 0.0 | 0.0 |
Bra039423.1-P | Field mustard | cytosol | 0.0 | 0.0 |
Protein Annotations
MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr9G16300_001 | EnsemblPlants:GSMUA_Achr9P16300_001 |
EnsemblPlants:GSMUA_Achr9T16300_001 | InterPro:L18e/L15P_sf | UniProt:M0U0T7 | PFAM:PF17135 | PANTHER:PTHR10934 | PANTHER:PTHR10934:SF5 |
InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI0002961E8B | SEG:seg | : |
Description
60S ribosomal protein L18-2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G16300_001]
Coordinates
chr9:-:10997099..10998960
Molecular Weight (calculated)
10210.6 Da
IEP (calculated)
12.403
GRAVY (calculated)
-0.684
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MKVTALRFTE TARARILKAG GECLTFDQLA LRAPLGQNTV LLRGPKNARE AVKHFGKAPG VPHSHTKPYV RSKGRKFERA RGRRKSRGFR V
001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV
Arabidopsis Description
RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.