Factsheet for VIT_14s0060g01930.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	VIT_18s0072g01030.t01	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	45.99	94.51
KRH33871	Soybean	nucleus	93.58	93.58
KRG92914	Soybean	nucleus	92.51	92.51
KRH68491	Soybean	nucleus	90.91	90.91
VIT_05s0077g02070.t01	Wine grape	cytosol	70.05	89.12
Bra001156.1-P	Field mustard	nucleus	87.7	87.7
Bra036611.1-P	Field mustard	cytosol	87.7	87.7
GSMUA_Achr5P27080_001	Banana	cytosol	62.57	87.31
GSMUA_Achr11P...	Banana	cytosol	62.57	87.31
OQU92626	Sorghum	cytosol	87.17	87.17
AT3G05590.1	Thale cress	nucleus	86.63	86.63
Bra009940.1-P	Field mustard	cytosol	86.63	86.63
AT5G27850.1	Thale cress	nucleus	86.1	86.1
EES17748	Sorghum	cytosol	86.1	85.64
TraesCS2A01G109900.1	Wheat	plastid	85.56	85.56
TraesCS4B01G166800.1	Wheat	cytosol	85.56	85.56
PGSC0003DMT400063593	Potato	cytosol	85.56	85.56
EER97722	Sorghum	cytosol	85.03	85.03
Zm00001d022462_P001	Maize	plastid	85.03	85.03
HORVU2Hr1G018820.1	Barley	cytosol	85.03	85.03
Zm00001d009848_P001	Maize	cytosol	85.03	85.03
TraesCS2D01G110100.1	Wheat	golgi, unclear	85.03	85.03
Os03t0341100-01	Rice	nucleus	85.03	85.03
Solyc01g099900.2.1	Tomato	nucleus	85.03	85.03
TraesCS4D01G169400.1	Wheat	cytosol, unclear	85.03	85.03
TraesCS2B01G127900.1	Wheat	cytosol	85.03	85.03
TraesCS1D01G105500.2	Wheat	golgi	84.49	84.04
TraesCS1A01G096500.2	Wheat	cytosol	83.96	83.96
TraesCS1B01G127200.1	Wheat	cytosol	83.96	83.96
Os05t0155100-01	Rice	nucleus	83.96	83.51
VIT_05s0077g02060.t01	Wine grape	mitochondrion	29.95	82.35
AT2G47570.1	Thale cress	cytosol, nucleus	81.82	82.26
CDY25018	Canola	cytosol	86.63	82.23
CDY36892	Canola	cytosol	26.2	81.67
CDY05185	Canola	cytosol	26.2	81.67
GSMUA_Achr2P01730_001	Banana	cytosol	87.17	81.09
CDY66803	Canola	cytosol	86.63	81.0
VIT_07s0005g00690.t01	Wine grape	plastid	96.79	80.44
Os07t0674700-01	Rice	plasma membrane	83.42	80.0
CDX99969	Canola	cytosol, plastid	87.7	78.1
CDX74138	Canola	extracellular	87.7	77.0
CDY19736	Canola	cytosol	87.7	76.28
HORVU2Hr1G018840.4	Barley	cytosol	36.9	75.82
KRG96775	Soybean	mitochondrion, nucleus	91.44	75.66
VIT_14s0036g01220.t01	Wine grape	cytosol	46.52	73.11
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	83.96	72.35
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	87.7	72.25
CDY05183	Canola	mitochondrion	83.96	70.4
CDX80616	Canola	cytosol	87.17	70.26
Zm00001d037603_P002	Maize	cytosol	85.03	69.13
GSMUA_Achr8P10280_001	Banana	cytosol	88.24	66.53
CDY18813	Canola	cytosol, mitochondrion	87.7	65.86
Bra040533.1-P	Field mustard	nucleus	86.1	62.16
CDY46988	Canola	cytosol	19.25	43.37
CDY27753	Canola	cytosol, mitochondrion	24.06	38.14
Bra039423.1-P	Field mustard	cytosol	24.06	38.14
VIT_00s0283g00090.t01	Wine grape	nucleus	22.46	20.9

Protein Annotations

EntrezGene:100259659	wikigene:100259659	EntrezGene:104881363	MapMan:17.1.2.1.18	Gene3D:3.100.10.10	UniProt:A5BIA1
EMBL:AM460399	ProteinID:CAN65685	ProteinID:CAN65685.1	ProteinID:CCB61875	ProteinID:CCB61875.1	EMBL:FN596746
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	InterPro:L18e/L15P_sf	EntrezGene:LOC100259659	wikigene:LOC100259659	PFAM:PF17135	PANTHER:PTHR10934
PANTHER:PTHR10934:SF9	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	TIGR:TC58929	TIGR:TC63885
UniParc:UPI000152119A	ArrayExpress:VIT_14s0060g01930	EnsemblPlantsGene:VIT_14s0060g01930	EnsemblPlants:VIT_14s0060g01930.t01	unigene:Vvi.7868	RefSeq:XP_002283392
RefSeq:XP_002283392.2	RefSeq:XP_010659657.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:+:1553322..1556003

Molecular Weight (calculated)

20905.0 Da

IEP (calculated)

11.831

GRAVY (calculated)

-0.392

Length

187 amino acids

Sequence
(BLAST)

001: MGIDLVAGGK SKKTKRTAPK SDDIYLKLLV KLYRFLVRRT GSKFNAVILK RLFMSKVNKP PLSLSRLVRY MGGKEGKIAV VVGTVTDDIR VYEVPALKVT
101: ALRFTETARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGKAPGVPHS HTKPYVRSKG RKFERARGRR NSRGFRV

Best Arabidopsis Sequence Match ( AT3G05590.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.