Factsheet for VIT_07s0005g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	VIT_18s0072g01030.t01	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0060g01930.t01	Wine grape	cytosol	80.44	96.79
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	38.22	94.51
VIT_05s0077g02070.t01	Wine grape	cytosol	58.22	89.12
Bra001156.1-P	Field mustard	nucleus	72.44	87.17
Bra036611.1-P	Field mustard	cytosol	72.44	87.17
GSMUA_Achr5P27080_001	Banana	cytosol	51.56	86.57
GSMUA_Achr11P...	Banana	cytosol	51.56	86.57
AT3G05590.1	Thale cress	nucleus	71.56	86.1
TraesCS4B01G166800.1	Wheat	cytosol	71.56	86.1
OQU92626	Sorghum	cytosol	71.56	86.1
Bra009940.1-P	Field mustard	cytosol	71.56	86.1
TraesCS4D01G169400.1	Wheat	cytosol, unclear	71.11	85.56
HORVU2Hr1G018820.1	Barley	cytosol	71.11	85.56
AT5G27850.1	Thale cress	nucleus	71.11	85.56
TraesCS2A01G109900.1	Wheat	plastid	71.11	85.56
TraesCS2B01G127900.1	Wheat	cytosol	70.67	85.03
TraesCS2D01G110100.1	Wheat	golgi, unclear	70.67	85.03
EES17748	Sorghum	cytosol	70.67	84.57
TraesCS1D01G105500.2	Wheat	golgi	70.22	84.04
Os03t0341100-01	Rice	nucleus	69.78	83.96
EER97722	Sorghum	cytosol	69.78	83.96
Zm00001d009848_P001	Maize	cytosol	69.78	83.96
TraesCS1A01G096500.2	Wheat	cytosol	69.78	83.96
Zm00001d022462_P001	Maize	plastid	69.78	83.96
TraesCS1B01G127200.1	Wheat	cytosol	69.78	83.96
VIT_05s0077g02060.t01	Wine grape	mitochondrion	25.33	83.82
Os05t0155100-01	Rice	nucleus	69.33	82.98
CDY25018	Canola	cytosol	72.0	82.23
AT2G47570.1	Thale cress	cytosol, nucleus	67.56	81.72
CDY66803	Canola	cytosol	72.0	81.0
GSMUA_Achr2P01730_001	Banana	cytosol	72.0	80.6
CDY05185	Canola	cytosol	21.33	80.0
CDY36892	Canola	cytosol	21.33	80.0
Os07t0674700-01	Rice	plasma membrane	68.44	78.97
CDX99969	Canola	cytosol, plastid	73.33	78.57
HORVU2Hr1G018840.4	Barley	cytosol	31.56	78.02
CDX74138	Canola	extracellular	72.89	77.0
CDY19736	Canola	cytosol	73.33	76.74
VIT_14s0036g01220.t01	Wine grape	cytosol	39.56	74.79
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	73.78	73.13
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	70.22	72.81
CDX80616	Canola	cytosol	74.22	71.98
CDY05183	Canola	mitochondrion	70.22	70.85
Zm00001d037603_P002	Maize	cytosol	69.78	68.26
GSMUA_Achr8P10280_001	Banana	cytosol	74.22	67.34
CDY18813	Canola	cytosol, mitochondrion	73.78	66.67
Bra040533.1-P	Field mustard	nucleus	72.0	62.55
CDY46988	Canola	cytosol	16.0	43.37
Bra039423.1-P	Field mustard	cytosol	20.0	38.14
CDY27753	Canola	cytosol, mitochondrion	20.0	38.14
VIT_00s0283g00090.t01	Wine grape	nucleus	19.56	21.89

Protein Annotations

EntrezGene:100250430	wikigene:100250430	EntrezGene:100256800	wikigene:100256800	MapMan:17.1.2.1.18	Gene3D:3.100.10.10
ProteinID:CCB59975	ProteinID:CCB59975.1	UniProt:F6HZ60	EMBL:FN596502	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:L18e/L15P_sf
EntrezGene:LOC100250430	wikigene:LOC100250430	EntrezGene:LOC100256800	wikigene:LOC100256800	PFAM:PF17135	PANTHER:PTHR10934
PANTHER:PTHR10934:SF9	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI000210A7B2	ArrayExpress:VIT_07s0005g00690
EnsemblPlantsGene:VIT_07s0005g00690	EnsemblPlants:VIT_07s0005g00690.t01	RefSeq:XP_002271179	RefSeq:XP_002271179.1	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:3341723..3345018

Molecular Weight (calculated)

25342.2 Da

IEP (calculated)

11.961

GRAVY (calculated)

-0.545

Length

225 amino acids

Sequence
(BLAST)

001: MDLRPSRYSN SNSQSPPQIK RRRSKTLASL LHINSSNGMG IDLVAGGKSK RTKRTAPKSD DIYLKLLVKL YRFLVRRTGS KFNAVILKRL FMSKVNKPPL
101: SLSRLVRYMD GKEGKIAVVV GTVTDDLRVY EVPCLKVTAL RFTERARARI EKAGGECLTF DQLALRAPLG QNTVLLRGPK NAREAVKHFG KAPGVPHSHT
201: KPYVRSKGRK FERARGRRNS RGFRV

Best Arabidopsis Sequence Match ( AT3G05590.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLTV KLYRFLVRRT NSKFNGVILK RLFMSKVNKA PLSLSRLVEF MTGKEDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS HSKPYVRAKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18BRPL18 [Source:UniProtKB/TrEMBL;Acc:A0A178V8M9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.