Factsheet for TraesCS4D01G169400.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	TraesCS4A01G206200.2	AT1G35670.1	19130088
AT5G27850.1	TraesCS4B01G109800.2	AT1G35670.1	19130088
AT5G27850.1	TraesCS4D01G107200.1	AT1G35670.1	19130088
AT5G27850.1	TraesCS5A01G107900.1	AT1G35670.1	19130088
AT5G27850.1	TraesCS5B01G115400.1	AT1G35670.1	19130088
AT5G27850.1	TraesCS5D01G122800.1	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G166800.1	Wheat	cytosol	98.4	98.4
TraesCS2D01G110100.1	Wheat	golgi, unclear	94.12	94.12
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	43.85	90.11
TraesCS1D01G105500.2	Wheat	golgi	88.77	88.3
GSMUA_Achr11P...	Banana	cytosol	63.1	88.06
GSMUA_Achr5P27080_001	Banana	cytosol	62.03	86.57
VIT_14s0060g01930.t01	Wine grape	cytosol	85.03	85.03
Bra001156.1-P	Field mustard	nucleus	83.42	83.42
CDY36892	Canola	cytosol	26.74	83.33
CDY05185	Canola	cytosol	26.74	83.33
KRH33871	Soybean	nucleus	82.89	82.89
PGSC0003DMT400081310	Potato	nucleus	82.89	82.89
Bra036611.1-P	Field mustard	cytosol	82.89	82.89
AT5G27850.1	Thale cress	nucleus	82.89	82.89
KRG92914	Soybean	nucleus	82.35	82.35
KRG96455	Soybean	nucleus	81.82	81.82
Solyc09g075290.2.1	Tomato	nucleus	81.82	81.82
AT3G05590.1	Thale cress	nucleus	81.82	81.82
Bra009940.1-P	Field mustard	cytosol	81.82	81.82
KRH68205	Soybean	nucleus	81.28	81.28
KRH68491	Soybean	nucleus	80.75	80.75
GSMUA_Achr2P01730_001	Banana	cytosol	86.1	80.1
PGSC0003DMT400063593	Potato	cytosol	78.07	78.07
CDY25018	Canola	cytosol	81.82	77.67
Solyc01g099900.2.1	Tomato	nucleus	77.54	77.54
CDY66803	Canola	cytosol	81.82	76.5
VIT_05s0077g02060.t01	Wine grape	mitochondrion	27.81	76.47
VIT_05s0077g02070.t01	Wine grape	cytosol	59.89	76.19
AT2G47570.1	Thale cress	cytosol, nucleus	74.87	75.27
CDX99969	Canola	cytosol, plastid	82.89	73.81
CDX74138	Canola	extracellular	83.42	73.24
CDY19736	Canola	cytosol	82.89	72.09
VIT_07s0005g00690.t01	Wine grape	plastid	85.56	71.11
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	83.42	68.72
CDY05183	Canola	mitochondrion	79.68	66.82
KRG96775	Soybean	mitochondrion, nucleus	80.75	66.81
CDX80616	Canola	cytosol	82.35	66.38
GSMUA_Achr8P10280_001	Banana	cytosol	86.63	65.32
CDY18813	Canola	cytosol, mitochondrion	83.42	62.65
VIT_14s0036g01220.t01	Wine grape	cytosol	38.5	60.5
Bra040533.1-P	Field mustard	nucleus	81.82	59.07
Solyc09g025200.1.1	Tomato	extracellular	20.32	52.78
CDY46988	Canola	cytosol	17.11	38.55
Bra039423.1-P	Field mustard	cytosol	22.46	35.59
CDY27753	Canola	cytosol, mitochondrion	22.46	35.59

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:L18e/L15P_sf	PFAM:PF17135
ScanProsite:PS01106	PANTHER:PTHR10934	PANTHER:PTHR10934:SF5	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	InterPro:Ribosomal_L18e_CS
SUPFAM:SSF52080	EnsemblPlantsGene:TraesCS4D01G169400	EnsemblPlants:TraesCS4D01G169400.1	:	:	:

Description

No Description!

Coordinates

chr4D:+:294349373..294352119

Molecular Weight (calculated)

21175.2 Da

IEP (calculated)

11.954

GRAVY (calculated)

-0.439

Length

187 amino acids

Sequence
(BLAST)

001: MGIDLVAGGR NKRTKRTAPK SDDVYLKLLV KLYRFLVRRT KSQFNAVILK RLFMSKTNRP PLSLRRLVKF MDGKDNQIAV IVGTITDDKR VYEVPAIKVA
101: ALRFTETARA RIVNAGGECL TFDQLALRAP LGQYTVLLRG PKNAREAVRH FGKAPGVPHS HTKPYVRSKG RKFEKARGRR NSRGFKV

Best Arabidopsis Sequence Match ( AT5G27850.1 )
(BLAST)

001: MGIDLIAGGK SKKTKRTAPK SDDVYLKLLV KLYRFLVRRS NSNFNAVILK RLFMSKVNKA PLSLSRLVEF MTGKDDKIAV LVGTITDDLR VHEIPAMKVT
101: ALRFTERARA RIEKAGGECL TFDQLALRAP LGQNTVLLRG PKNSREAVKH FGPAPGVPHS NTKPYVRHKG RKFEKARGKR KSRGFKV

Arabidopsis Description

RPL18C60S ribosomal protein L18-3 [Source:UniProtKB/Swiss-Prot;Acc:Q940B0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.