Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G27850.1 | CDX73342 | AT1G35670.1 | 19130088 |
| AT5G27850.1 | CDY37101 | AT1G35670.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009940.1-P | Field mustard | cytosol | 79.74 | 98.93 |
| CDY66803 | Canola | cytosol | 84.05 | 97.5 |
| CDY25018 | Canola | cytosol | 81.9 | 96.45 |
| AT5G27850.1 | Thale cress | nucleus | 75.43 | 93.58 |
| CDY36892 | Canola | cytosol | 23.71 | 91.67 |
| CDY05185 | Canola | cytosol | 23.71 | 91.67 |
| GSMUA_Achr9P16300_001 | Banana | cytosol, mitochondrion | 35.34 | 90.11 |
| CDX99969 | Canola | cytosol, plastid | 80.6 | 89.05 |
| VIT_14s0060g01930.t01 | Wine grape | cytosol | 70.26 | 87.17 |
| CDY19736 | Canola | cytosol | 80.17 | 86.51 |
| CDX74138 | Canola | extracellular | 78.02 | 84.98 |
| PGSC0003DMT400081310 | Potato | nucleus | 68.1 | 84.49 |
| KRH33871 | Soybean | nucleus | 68.1 | 84.49 |
| KRH68205 | Soybean | nucleus | 67.67 | 83.96 |
| OQU92626 | Sorghum | cytosol | 67.24 | 83.42 |
| KRG96455 | Soybean | nucleus | 67.24 | 83.42 |
| KRG92914 | Soybean | nucleus | 67.24 | 83.42 |
| TraesCS2A01G109900.1 | Wheat | plastid | 66.81 | 82.89 |
| TraesCS2B01G127900.1 | Wheat | cytosol | 66.81 | 82.89 |
| TraesCS2D01G110100.1 | Wheat | golgi, unclear | 66.81 | 82.89 |
| HORVU2Hr1G018820.1 | Barley | cytosol | 66.81 | 82.89 |
| TraesCS4D01G169400.1 | Wheat | cytosol, unclear | 66.38 | 82.35 |
| TraesCS4B01G166800.1 | Wheat | cytosol | 66.38 | 82.35 |
| EER97722 | Sorghum | cytosol | 66.38 | 82.35 |
| KRH68491 | Soybean | nucleus | 66.38 | 82.35 |
| VIT_05s0077g02070.t01 | Wine grape | cytosol | 52.16 | 82.31 |
| EES17748 | Sorghum | cytosol | 66.38 | 81.91 |
| Zm00001d022462_P001 | Maize | plastid | 65.95 | 81.82 |
| Zm00001d009848_P001 | Maize | cytosol | 65.52 | 81.28 |
| PGSC0003DMT400063593 | Potato | cytosol | 65.52 | 81.28 |
| Os05t0155100-01 | Rice | nucleus | 65.52 | 80.85 |
| Os03t0341100-01 | Rice | nucleus | 65.09 | 80.75 |
| GSMUA_Achr5P27080_001 | Banana | cytosol | 46.55 | 80.6 |
| TraesCS1D01G105500.2 | Wheat | golgi | 65.09 | 80.32 |
| TraesCS1A01G096500.2 | Wheat | cytosol | 64.66 | 80.21 |
| TraesCS1B01G127200.1 | Wheat | cytosol | 64.66 | 80.21 |
| GSMUA_Achr11P... | Banana | cytosol | 45.69 | 79.1 |
| CDY40718 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 77.16 | 78.85 |
| GSMUA_Achr2P01730_001 | Banana | cytosol | 66.38 | 76.62 |
| Os07t0674700-01 | Rice | plasma membrane | 64.22 | 76.41 |
| CDY05183 | Canola | mitochondrion | 73.28 | 76.23 |
| VIT_07s0005g00690.t01 | Wine grape | plastid | 71.98 | 74.22 |
| CDY18813 | Canola | cytosol, mitochondrion | 76.72 | 71.49 |
| VIT_05s0077g02060.t01 | Wine grape | mitochondrion | 20.69 | 70.59 |
| HORVU1Hr1G022570.1 | Barley | cytosol, plasma membrane | 65.95 | 70.51 |
| HORVU2Hr1G018840.4 | Barley | cytosol | 27.59 | 70.33 |
| KRG96775 | Soybean | mitochondrion, nucleus | 67.24 | 69.03 |
| VIT_14s0036g01220.t01 | Wine grape | cytosol | 34.48 | 67.23 |
| Zm00001d037603_P002 | Maize | cytosol | 65.52 | 66.09 |
| GSMUA_Achr8P10280_001 | Banana | cytosol | 68.1 | 63.71 |
| CDY46988 | Canola | cytosol | 16.81 | 46.99 |
| CDY27753 | Canola | cytosol, mitochondrion | 20.69 | 40.68 |
Protein Annotations
| MapMan:17.1.2.1.18 | Gene3D:3.100.10.10 | GO:A0A078CTY5 | EnsemblPlants:CDX80616 | ProteinID:CDX80616 | ProteinID:CDX80616.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00133752001 | InterPro:L18e/L15P_sf | PFAM:PF17135 | PANTHER:PTHR10934 |
| PANTHER:PTHR10934:SF9 | InterPro:Ribosomal_L18e | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI0004EF3134 | : |
Description
BnaC07g28280D
Coordinates
chrLK031821:-:1693162..1694745
Molecular Weight (calculated)
26174.5 Da
IEP (calculated)
11.353
GRAVY (calculated)
-0.362
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFDSLNWIL TSSIYKQKKN YIDKTNIFTK RKDLHFRFPP STAQAMGIDL IAGGKSKKTK RTAPKSDDVY LKLLVKLYRF LVRRTGSKFD AVILKRLFMS
101: KVNKAPLSLS KLVEFMKGKD GKIAVLVGTI TDDLRVHEIP AMKVTALRFT ERARARIEKA GGECLTFDQL ALVAPLGQNT VLLRGPKNSR EAVKHFGLAP
201: GVPHSHSKPY VRSKGRKFEK ARGKRKSRGF KV
101: KVNKAPLSLS KLVEFMKGKD GKIAVLVGTI TDDLRVHEIP AMKVTALRFT ERARARIEKA GGECLTFDQL ALVAPLGQNT VLLRGPKNSR EAVKHFGLAP
201: GVPHSHSKPY VRSKGRKFEK ARGKRKSRGF KV
001: IDLIAGGKSK KTKRTEPKSD DVYLKLLVKA NRYLVRRTES KFNAVILKRL FMSKVNKAPL SLSRLVRYMD GKDGKIAVIV GTVTDDVRIE DVPALTVTAL
101: RFTESARARI HKAGGECLTF DQLALPCPTW SENTVLLRGP KNTREAVKHF GPAPGVPHSH TKPYVRQTGK KIEIARGRRR SRGFKV
101: RFTESARARI HKAGGECLTF DQLALPCPTW SENTVLLRGP KNTREAVKHF GPAPGVPHSH TKPYVRQTGK KIEIARGRRR SRGFKV
Arabidopsis Description
Ribosomal protein L18e/L15 superfamily protein [Source:TAIR;Acc:AT2G47570]
SUBAcon: [nucleus,cytosol]
SUBAcon: [nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.