Factsheet for TraesCS1D01G105500.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G206200.2
TraesCS4B01G109800.2
TraesCS4D01G107200.1
TraesCS5A01G107900.1
TraesCS5B01G115400.1
TraesCS5D01G122800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27850.1	TraesCS4A01G206200.2	AT1G35670.1	19130088
AT5G27850.1	TraesCS4B01G109800.2	AT1G35670.1	19130088
AT5G27850.1	TraesCS4D01G107200.1	AT1G35670.1	19130088
AT5G27850.1	TraesCS5A01G107900.1	AT1G35670.1	19130088
AT5G27850.1	TraesCS5B01G115400.1	AT1G35670.1	19130088
AT5G27850.1	TraesCS5D01G122800.1	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G096500.2	Wheat	cytosol	97.87	98.4
TraesCS1B01G127200.1	Wheat	cytosol	97.87	98.4
EES17748	Sorghum	cytosol	92.02	92.02
Zm00001d009848_P001	Maize	cytosol	90.96	91.44
Os05t0155100-01	Rice	nucleus	90.43	90.43
TraesCS2D01G110100.1	Wheat	golgi, unclear	89.89	90.37
GSMUA_Achr9P16300_001	Banana	cytosol, mitochondrion	43.09	89.01
TraesCS4D01G169400.1	Wheat	cytosol, unclear	88.3	88.77
HORVU1Hr1G022570.1	Barley	cytosol, plasma membrane	98.94	85.71
VIT_14s0060g01930.t01	Wine grape	cytosol	84.04	84.49
KRH33871	Soybean	nucleus	82.45	82.89
GSMUA_Achr5P27080_001	Banana	cytosol	58.51	82.09
GSMUA_Achr11P...	Banana	cytosol	58.51	82.09
KRG96455	Soybean	nucleus	81.38	81.82
KRG92914	Soybean	nucleus	81.38	81.82
Bra036611.1-P	Field mustard	cytosol	80.85	81.28
Bra001156.1-P	Field mustard	nucleus	80.85	81.28
PGSC0003DMT400081310	Potato	nucleus	80.85	81.28
KRH68205	Soybean	nucleus	80.85	81.28
Solyc09g075290.2.1	Tomato	nucleus	80.85	81.28
AT3G05590.1	Thale cress	nucleus	80.32	80.75
Bra009940.1-P	Field mustard	cytosol	79.79	80.21
AT5G27850.1	Thale cress	nucleus	79.79	80.21
CDY36892	Canola	cytosol	25.53	80.0
CDY05185	Canola	cytosol	25.53	80.0
KRH68491	Soybean	nucleus	78.72	79.14
PGSC0003DMT400063593	Potato	cytosol	77.13	77.54
GSMUA_Achr2P01730_001	Banana	cytosol	82.45	77.11
Solyc01g099900.2.1	Tomato	nucleus	76.6	77.01
CDY25018	Canola	cytosol	80.32	76.65
VIT_05s0077g02060.t01	Wine grape	mitochondrion	27.66	76.47
AT2G47570.1	Thale cress	cytosol, nucleus	75.0	75.81
VIT_05s0077g02070.t01	Wine grape	cytosol	59.04	75.51
CDY66803	Canola	cytosol	79.26	74.5
Zm00001d037603_P002	Maize	cytosol	90.96	74.35
CDX99969	Canola	cytosol, plastid	80.85	72.38
CDX74138	Canola	extracellular	80.85	71.36
CDY19736	Canola	cytosol	80.85	70.7
VIT_07s0005g00690.t01	Wine grape	plastid	84.04	70.22
CDY40718	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	80.85	66.96
KRG96775	Soybean	mitochondrion, nucleus	79.79	66.37
CDX80616	Canola	cytosol	80.32	65.09
CDY05183	Canola	mitochondrion	77.13	65.02
GSMUA_Achr8P10280_001	Banana	cytosol	81.91	62.1
CDY18813	Canola	cytosol, mitochondrion	80.85	61.04
VIT_14s0036g01220.t01	Wine grape	cytosol	37.23	58.82
Bra040533.1-P	Field mustard	nucleus	79.26	57.53
Solyc09g025200.1.1	Tomato	extracellular	19.15	50.0
CDY46988	Canola	cytosol	17.02	38.55
CDY27753	Canola	cytosol, mitochondrion	22.34	35.59
Bra039423.1-P	Field mustard	cytosol	22.34	35.59

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:L18e/L15P_sf	PFAM:PF17135
ScanProsite:PS01106	PANTHER:PTHR10934	PANTHER:PTHR10934:SF5	InterPro:Ribosomal_L18e	InterPro:Ribosomal_L18e/L15P	InterPro:Ribosomal_L18e_CS
SUPFAM:SSF52080	EnsemblPlantsGene:TraesCS1D01G105500	EnsemblPlants:TraesCS1D01G105500.2	:	:	:

Description

No Description!

Coordinates

chr1D:+:97530260..97533189

Molecular Weight (calculated)

21305.5 Da

IEP (calculated)

12.036

GRAVY (calculated)

-0.510

Length

188 amino acids

Sequence
(BLAST)

001: MGIDLVAGGR NKRTKRVAPK SDDVYLKLLV KLYRFLVRRT KSKFNAVILK RLFMSKTNRP PLSMRRLSNF MKGKEEKNIA VVVGTITDDM RIQEVPAMKV
101: TALRFTETAR ARIINAGGEC LTFDQLALRA PTGENTILLR GPKNAREAVR HFGKAPGVPH SHTKPYVRSK GRKFEKARGR RNSRGFKV

Best Arabidopsis Sequence Match ( AT2G47570.1 )
(BLAST)

001: IDLIAGGKSK KTKRTEPKSD DVYLKLLVKA NRYLVRRTES KFNAVILKRL FMSKVNKAPL SLSRLVRYMD GKDGKIAVIV GTVTDDVRIE DVPALTVTAL
101: RFTESARARI HKAGGECLTF DQLALPCPTW SENTVLLRGP KNTREAVKHF GPAPGVPHSH TKPYVRQTGK KIEIARGRRR SRGFKV

Arabidopsis Description

Ribosomal protein L18e/L15 superfamily protein [Source:TAIR;Acc:AT2G47570]
SUBAcon: [nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.